miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24736 5' -56.5 NC_005264.1 + 56915 0.66 0.909364
Target:  5'- -uGGGaAGCGAaGAUGGCGUagaGGGGgcaaGCg -3'
miRNA:   3'- cuCCC-UUGCUcUUACCGCG---CCCCa---UG- -5'
24736 5' -56.5 NC_005264.1 + 117830 0.66 0.903224
Target:  5'- -cGGGuuCGAGGGgaGGCGCGGcGGagUGCg -3'
miRNA:   3'- cuCCCuuGCUCUUa-CCGCGCC-CC--AUG- -5'
24736 5' -56.5 NC_005264.1 + 131601 0.66 0.903224
Target:  5'- gGAGGGAGCGGc----GCGCGuGGGcGCg -3'
miRNA:   3'- -CUCCCUUGCUcuuacCGCGC-CCCaUG- -5'
24736 5' -56.5 NC_005264.1 + 20269 0.66 0.901969
Target:  5'- aGGGGAcgguGCGAGAAgauacuugucuGCGCGGuGUACg -3'
miRNA:   3'- cUCCCU----UGCUCUUac---------CGCGCCcCAUG- -5'
24736 5' -56.5 NC_005264.1 + 140555 0.66 0.890254
Target:  5'- -uGGGAugGcAGAagGGCGCGcgcGGGUu- -3'
miRNA:   3'- cuCCCUugC-UCUuaCCGCGC---CCCAug -5'
24736 5' -56.5 NC_005264.1 + 80986 0.66 0.890254
Target:  5'- --aGGAACGAGAcggGGCaCGGGGa-- -3'
miRNA:   3'- cucCCUUGCUCUua-CCGcGCCCCaug -5'
24736 5' -56.5 NC_005264.1 + 106728 0.66 0.890254
Target:  5'- uAGuGGucGACaAGGAUGGUGCGGGGg-- -3'
miRNA:   3'- cUC-CC--UUGcUCUUACCGCGCCCCaug -5'
24736 5' -56.5 NC_005264.1 + 162239 0.66 0.876385
Target:  5'- -cGGGGGgGGGGggGGCuacgGCGGGGcugGCg -3'
miRNA:   3'- cuCCCUUgCUCUuaCCG----CGCCCCa--UG- -5'
24736 5' -56.5 NC_005264.1 + 132367 0.66 0.876385
Target:  5'- aGAGGGGcGCGAGGAUGaaCGuCGGGGc-- -3'
miRNA:   3'- -CUCCCU-UGCUCUUACc-GC-GCCCCaug -5'
24736 5' -56.5 NC_005264.1 + 13340 0.66 0.876385
Target:  5'- aGAGGGGcGCGAGGAUGaaCGuCGGGGc-- -3'
miRNA:   3'- -CUCCCU-UGCUCUUACc-GC-GCCCCaug -5'
24736 5' -56.5 NC_005264.1 + 43212 0.66 0.876385
Target:  5'- -cGGGGGgGGGGggGGCuacgGCGGGGcugGCg -3'
miRNA:   3'- cuCCCUUgCUCUuaCCG----CGCCCCa--UG- -5'
24736 5' -56.5 NC_005264.1 + 13056 0.67 0.869124
Target:  5'- cGAGGGGA-GAGAAUuuucGG-GCGGGGa-- -3'
miRNA:   3'- -CUCCCUUgCUCUUA----CCgCGCCCCaug -5'
24736 5' -56.5 NC_005264.1 + 132083 0.67 0.869124
Target:  5'- cGAGGGGA-GAGAAUuuucGG-GCGGGGa-- -3'
miRNA:   3'- -CUCCCUUgCUCUUA----CCgCGCCCCaug -5'
24736 5' -56.5 NC_005264.1 + 25942 0.67 0.869124
Target:  5'- cGAGGcGAcgaagAUGAGGAcGGCGCGGacguGUGCa -3'
miRNA:   3'- -CUCC-CU-----UGCUCUUaCCGCGCCc---CAUG- -5'
24736 5' -56.5 NC_005264.1 + 56899 0.67 0.869124
Target:  5'- -cGGGAacuggGCGAGcauuAUGGgGCGGcGUACg -3'
miRNA:   3'- cuCCCU-----UGCUCu---UACCgCGCCcCAUG- -5'
24736 5' -56.5 NC_005264.1 + 162344 0.67 0.846101
Target:  5'- gGAGGGAG-GAGGGaGGaGCGGGGg-- -3'
miRNA:   3'- -CUCCCUUgCUCUUaCCgCGCCCCaug -5'
24736 5' -56.5 NC_005264.1 + 43317 0.67 0.846101
Target:  5'- gGAGGGAG-GAGGGaGGaGCGGGGg-- -3'
miRNA:   3'- -CUCCCUUgCUCUUaCCgCGCCCCaug -5'
24736 5' -56.5 NC_005264.1 + 13542 0.67 0.838033
Target:  5'- aGGGGGAggaggaagAgGAGAGcGGCGCGGGcGg-- -3'
miRNA:   3'- -CUCCCU--------UgCUCUUaCCGCGCCC-Caug -5'
24736 5' -56.5 NC_005264.1 + 116433 0.67 0.838033
Target:  5'- -uGGGGGCGuc--UGGcCGCGGGGgcgACg -3'
miRNA:   3'- cuCCCUUGCucuuACC-GCGCCCCa--UG- -5'
24736 5' -56.5 NC_005264.1 + 132569 0.67 0.838033
Target:  5'- aGGGGGAggaggaagAgGAGAGcGGCGCGGGcGg-- -3'
miRNA:   3'- -CUCCCU--------UgCUCUUaCCGCGCCC-Caug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.