miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24737 5' -49.7 NC_005264.1 + 58686 0.71 0.950563
Target:  5'- aGGCGCACccGGcCUCUAUGA--CGGCc -3'
miRNA:   3'- -CCGCGUGcuUCuGAGAUAUUcaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 59724 0.71 0.950563
Target:  5'- cGGCGCGCauggcucguuaGAAGAgUC-AUGGGgCGGCg -3'
miRNA:   3'- -CCGCGUG-----------CUUCUgAGaUAUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 76004 0.71 0.950563
Target:  5'- uGGCGCccccuaGAAGA-UCUG-AAGUCGGCc -3'
miRNA:   3'- -CCGCGug----CUUCUgAGAUaUUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 14843 0.71 0.950988
Target:  5'- uGGCG-ACGAGGACUCcagagcucacgagcgAUAGGUgCGGUa -3'
miRNA:   3'- -CCGCgUGCUUCUGAGa--------------UAUUCA-GCCG- -5'
24737 5' -49.7 NC_005264.1 + 9608 0.71 0.954704
Target:  5'- uGCGC-CGAAGGCUCcGUAAcgUGGCu -3'
miRNA:   3'- cCGCGuGCUUCUGAGaUAUUcaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 138607 0.71 0.964353
Target:  5'- cGGCGC-CGGAGugUCUuacuauccCGGCg -3'
miRNA:   3'- -CCGCGuGCUUCugAGAuauuca--GCCG- -5'
24737 5' -49.7 NC_005264.1 + 3828 0.7 0.97189
Target:  5'- uGCGCGCGGAGAC-CUgcuccuggcAUGGGUCcuGCg -3'
miRNA:   3'- cCGCGUGCUUCUGaGA---------UAUUCAGc-CG- -5'
24737 5' -49.7 NC_005264.1 + 153353 0.7 0.974664
Target:  5'- -aCGCugGcuGACUCgcugacgcgAGGUCGGCa -3'
miRNA:   3'- ccGCGugCuuCUGAGaua------UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 34326 0.7 0.974664
Target:  5'- -aCGCugGcuGACUCgcugacgcgAGGUCGGCa -3'
miRNA:   3'- ccGCGugCuuCUGAGaua------UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 161466 0.7 0.977234
Target:  5'- cGCGCGC-AGGAUgcaUCguaccUAGGUCGGCg -3'
miRNA:   3'- cCGCGUGcUUCUG---AGau---AUUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 24084 0.7 0.979606
Target:  5'- aGGCGCAUGAAG--UCUAUAGGUaguucGCc -3'
miRNA:   3'- -CCGCGUGCUUCugAGAUAUUCAgc---CG- -5'
24737 5' -49.7 NC_005264.1 + 101930 0.7 0.979606
Target:  5'- uGGCGCGCGAAacuGGCggc----GUCGGCc -3'
miRNA:   3'- -CCGCGUGCUU---CUGagauauuCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 54703 0.7 0.979606
Target:  5'- cGGCGC-CGAGGACaggGUGGGaagcgUGGCg -3'
miRNA:   3'- -CCGCGuGCUUCUGagaUAUUCa----GCCG- -5'
24737 5' -49.7 NC_005264.1 + 137498 0.7 0.979606
Target:  5'- cGCGUucAUGAAGuCUCUGgGGGcCGGCa -3'
miRNA:   3'- cCGCG--UGCUUCuGAGAUaUUCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 24550 0.7 0.980502
Target:  5'- uGCGCcCGGAGACUCUuUugccguucgucucuaGAGacUCGGCg -3'
miRNA:   3'- cCGCGuGCUUCUGAGAuA---------------UUC--AGCCG- -5'
24737 5' -49.7 NC_005264.1 + 145621 0.69 0.981789
Target:  5'- aGGCGCGCaGGAGGaacCUG-GAGUCGGa -3'
miRNA:   3'- -CCGCGUG-CUUCUga-GAUaUUCAGCCg -5'
24737 5' -49.7 NC_005264.1 + 95740 0.69 0.983793
Target:  5'- gGGCGCugG-AGACggccaugggggaUCUGUAcG-CGGCg -3'
miRNA:   3'- -CCGCGugCuUCUG------------AGAUAUuCaGCCG- -5'
24737 5' -49.7 NC_005264.1 + 99040 0.69 0.983793
Target:  5'- aGCGCaaaGCGggGcCUCccccGAGUCGGUg -3'
miRNA:   3'- cCGCG---UGCuuCuGAGaua-UUCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 4328 0.69 0.983793
Target:  5'- aGGUGCGCGAaaGGuaGCUUaucgcgAUAgauAGUCGGCg -3'
miRNA:   3'- -CCGCGUGCU--UC--UGAGa-----UAU---UCAGCCG- -5'
24737 5' -49.7 NC_005264.1 + 104860 0.69 0.983793
Target:  5'- cGGCcgccGCGCGggGACUCcgAUGAcgauaGGCa -3'
miRNA:   3'- -CCG----CGUGCuuCUGAGa-UAUUcag--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.