miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 3' -50.5 NC_005264.1 + 124298 0.72 0.881226
Target:  5'- --cGAGUCGCGGccGGACGGCGgggCGGCGg -3'
miRNA:   3'- ugaUUCGGUGUC--UUUGCUGUa--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 5271 0.72 0.881226
Target:  5'- --cGAGUCGCGGccGGACGGCGgggCGGCGg -3'
miRNA:   3'- ugaUUCGGUGUC--UUUGCUGUa--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 118047 0.72 0.888395
Target:  5'- ----uGCCGCGGcgaccGCGGCGUCGGCa -3'
miRNA:   3'- ugauuCGGUGUCuu---UGCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 16915 0.72 0.895323
Target:  5'- ---cGGCCGCGGAcGAUGGCggCGGCGu -3'
miRNA:   3'- ugauUCGGUGUCU-UUGCUGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 55350 0.72 0.895323
Target:  5'- uGCUGuguauuuuGGCCAUAGccGGGCcGCGUCGGCGg -3'
miRNA:   3'- -UGAU--------UCGGUGUC--UUUGcUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 49343 0.72 0.902003
Target:  5'- cGCUcGGCC-CGGAGgaacGCGGCAagaUCGGCGc -3'
miRNA:   3'- -UGAuUCGGuGUCUU----UGCUGU---AGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 37179 0.72 0.908435
Target:  5'- cGCUGGGCCGCAGA--CG-CAUuuuaCGGCGc -3'
miRNA:   3'- -UGAUUCGGUGUCUuuGCuGUA----GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 26970 0.71 0.912786
Target:  5'- --gAGGCCcaugcgucugaucaGCGGAGGCacgGACAUCGGCGu -3'
miRNA:   3'- ugaUUCGG--------------UGUCUUUG---CUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 21066 0.71 0.920538
Target:  5'- -gUAGGCCAaGGAucuucuuccGCGGCGUCGGCa -3'
miRNA:   3'- ugAUUCGGUgUCUu--------UGCUGUAGCCGc -5'
24739 3' -50.5 NC_005264.1 + 84774 0.71 0.931618
Target:  5'- aGCgcgGAGCUAUAGAuacaGACGGCAcauucgccUCGGCa -3'
miRNA:   3'- -UGa--UUCGGUGUCU----UUGCUGU--------AGCCGc -5'
24739 3' -50.5 NC_005264.1 + 88544 0.7 0.941675
Target:  5'- uACUGuggcGCCGCAGguACGAgAUcgCGGCGa -3'
miRNA:   3'- -UGAUu---CGGUGUCuuUGCUgUA--GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 19268 0.7 0.946323
Target:  5'- --cGGGCCcCGGGGACGGCAgagUCGGgGg -3'
miRNA:   3'- ugaUUCGGuGUCUUUGCUGU---AGCCgC- -5'
24739 3' -50.5 NC_005264.1 + 79872 0.7 0.95072
Target:  5'- cCUucGUCACGGggGCG-CggCGGCGa -3'
miRNA:   3'- uGAuuCGGUGUCuuUGCuGuaGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 81913 0.7 0.95487
Target:  5'- --cGAGCCAgCAG-AACGAUcgucgcguaGUCGGCGg -3'
miRNA:   3'- ugaUUCGGU-GUCuUUGCUG---------UAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 136518 0.7 0.95487
Target:  5'- aGCUAGGuCCGagacCGGAGACGACG-CGGaCGa -3'
miRNA:   3'- -UGAUUC-GGU----GUCUUUGCUGUaGCC-GC- -5'
24739 3' -50.5 NC_005264.1 + 24332 0.7 0.95487
Target:  5'- --gGGGCCGCAGuGAACGGCGg-GGCa -3'
miRNA:   3'- ugaUUCGGUGUC-UUUGCUGUagCCGc -5'
24739 3' -50.5 NC_005264.1 + 83130 0.7 0.95487
Target:  5'- --aAGGCCGCGGAGGCG-CGUCuGCc -3'
miRNA:   3'- ugaUUCGGUGUCUUUGCuGUAGcCGc -5'
24739 3' -50.5 NC_005264.1 + 58399 0.7 0.958014
Target:  5'- cGCcguGGCCAUugcucguuCGACAUCGGCGg -3'
miRNA:   3'- -UGau-UCGGUGucuuu---GCUGUAGCCGC- -5'
24739 3' -50.5 NC_005264.1 + 16990 0.7 0.958396
Target:  5'- aACUccGCCGguccaaacagacuCAGGGACGGCAaaggCGGCGa -3'
miRNA:   3'- -UGAuuCGGU-------------GUCUUUGCUGUa---GCCGC- -5'
24739 3' -50.5 NC_005264.1 + 2468 0.7 0.958776
Target:  5'- aGCUGGGCCuucGCGGcugcuuCGACGauggUCGGCGg -3'
miRNA:   3'- -UGAUUCGG---UGUCuuu---GCUGU----AGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.