miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24740 5' -52.4 NC_005264.1 + 158976 0.66 0.987705
Target:  5'- --aGACGUGGggcagCCCAauccccGGCGcAGGACCc -3'
miRNA:   3'- gugUUGUAUCa----GGGU------UCGC-UCCUGGc -5'
24740 5' -52.4 NC_005264.1 + 77877 0.66 0.982399
Target:  5'- aCGCAGCAgccUGG-CCgCAAGCGAGcACCc -3'
miRNA:   3'- -GUGUUGU---AUCaGG-GUUCGCUCcUGGc -5'
24740 5' -52.4 NC_005264.1 + 8464 0.66 0.982399
Target:  5'- cCAUAGCAUccgccagcugGGUcCCCAAGCagcagaguGGGCCGg -3'
miRNA:   3'- -GUGUUGUA----------UCA-GGGUUCGcu------CCUGGC- -5'
24740 5' -52.4 NC_005264.1 + 148179 0.66 0.980294
Target:  5'- gGCAGCAUGGUCUCugccguugccGCGAGGGa-- -3'
miRNA:   3'- gUGUUGUAUCAGGGuu--------CGCUCCUggc -5'
24740 5' -52.4 NC_005264.1 + 154923 0.66 0.980294
Target:  5'- gGCAGCGUuacGUCCCcccaguacuccGGCGAGGAgaccuCCGa -3'
miRNA:   3'- gUGUUGUAu--CAGGGu----------UCGCUCCU-----GGC- -5'
24740 5' -52.4 NC_005264.1 + 63071 0.66 0.980294
Target:  5'- -------cGGUCuCCAgcucGGCGAGGGCCGu -3'
miRNA:   3'- guguuguaUCAG-GGU----UCGCUCCUGGC- -5'
24740 5' -52.4 NC_005264.1 + 24300 0.66 0.978006
Target:  5'- aCGCGguuACAUccacGGUgCCGAGCGuugaaGGGGCCGc -3'
miRNA:   3'- -GUGU---UGUA----UCAgGGUUCGC-----UCCUGGC- -5'
24740 5' -52.4 NC_005264.1 + 87370 0.67 0.975529
Target:  5'- gCGCGAC-UGGccacCCCAGGCGgacuuuGGGGCCa -3'
miRNA:   3'- -GUGUUGuAUCa---GGGUUCGC------UCCUGGc -5'
24740 5' -52.4 NC_005264.1 + 157637 0.67 0.973947
Target:  5'- aGCAACGUguucgcggcuuccgaAGUUUCGGccGCGAGGGCCu -3'
miRNA:   3'- gUGUUGUA---------------UCAGGGUU--CGCUCCUGGc -5'
24740 5' -52.4 NC_005264.1 + 122840 0.67 0.972853
Target:  5'- cCGCGAguUcgGG-CCCGGGCG-GGGCCGc -3'
miRNA:   3'- -GUGUUguA--UCaGGGUUCGCuCCUGGC- -5'
24740 5' -52.4 NC_005264.1 + 3814 0.67 0.972853
Target:  5'- cCGCGAguUcgGG-CCCGGGCG-GGGCCGc -3'
miRNA:   3'- -GUGUUguA--UCaGGGUUCGCuCCUGGC- -5'
24740 5' -52.4 NC_005264.1 + 53681 0.67 0.972853
Target:  5'- aACAAgGUGGaCCUGAGCGGGGAg-- -3'
miRNA:   3'- gUGUUgUAUCaGGGUUCGCUCCUggc -5'
24740 5' -52.4 NC_005264.1 + 4701 0.67 0.972853
Target:  5'- uGCGACGU--UCUCGGGUGAGGcCCa -3'
miRNA:   3'- gUGUUGUAucAGGGUUCGCUCCuGGc -5'
24740 5' -52.4 NC_005264.1 + 35897 0.67 0.969972
Target:  5'- gGCAGCGUuacGUCCCcccaguacuccGGCGAGaGACCu -3'
miRNA:   3'- gUGUUGUAu--CAGGGu----------UCGCUC-CUGGc -5'
24740 5' -52.4 NC_005264.1 + 2968 0.67 0.968142
Target:  5'- -cCGGCAUAGUUCCGaccacgaauccaucgAGCGccgacuGGGCCGg -3'
miRNA:   3'- guGUUGUAUCAGGGU---------------UCGCu-----CCUGGC- -5'
24740 5' -52.4 NC_005264.1 + 158764 0.67 0.968142
Target:  5'- gGCGACAUGGggccUCCCugcgacauagacgaaGAG-GAGGACCa -3'
miRNA:   3'- gUGUUGUAUC----AGGG---------------UUCgCUCCUGGc -5'
24740 5' -52.4 NC_005264.1 + 86396 0.67 0.966879
Target:  5'- gCGCAGCGU-GUCCUucgaGAGCucucuaGGGACCGu -3'
miRNA:   3'- -GUGUUGUAuCAGGG----UUCGc-----UCCUGGC- -5'
24740 5' -52.4 NC_005264.1 + 150142 0.68 0.960032
Target:  5'- cUAgGAUccGGUCCCGGGCGuGGuCCGc -3'
miRNA:   3'- -GUgUUGuaUCAGGGUUCGCuCCuGGC- -5'
24740 5' -52.4 NC_005264.1 + 59981 0.68 0.960032
Target:  5'- aCGCGGCgGUGG-CCgCGAGCGAGacGGCCGc -3'
miRNA:   3'- -GUGUUG-UAUCaGG-GUUCGCUC--CUGGC- -5'
24740 5' -52.4 NC_005264.1 + 31115 0.68 0.960032
Target:  5'- cUAgGAUccGGUCCCGGGCGuGGuCCGc -3'
miRNA:   3'- -GUgUUGuaUCAGGGUUCGCuCCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.