miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24742 3' -45.7 NC_005264.1 + 146508 0.71 0.997001
Target:  5'- uGGGCCGCGCGgu-UCCA----GAGCu -3'
miRNA:   3'- gCUUGGCGUGCauuAGGUguauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 136897 0.71 0.997482
Target:  5'- uGGGCgCGUACGUGAgCCGCGUcguGCa -3'
miRNA:   3'- gCUUG-GCGUGCAUUaGGUGUAuuuCG- -5'
24742 3' -45.7 NC_005264.1 + 115812 0.71 0.997896
Target:  5'- gGGACCGCgggaggccGCGU--UCCACcGUGAGGUg -3'
miRNA:   3'- gCUUGGCG--------UGCAuuAGGUG-UAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 5872 0.71 0.997896
Target:  5'- cCGcGCCGCgaGCGUGGUCCAguaguUGAGGUa -3'
miRNA:   3'- -GCuUGGCG--UGCAUUAGGUgu---AUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 36249 0.71 0.997896
Target:  5'- gGAGCCGCACGUG----GCG-GAAGCg -3'
miRNA:   3'- gCUUGGCGUGCAUuaggUGUaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 138181 0.71 0.997896
Target:  5'- uCGAACCGCAgGUGG-CCAgaacCGUGGGGa -3'
miRNA:   3'- -GCUUGGCGUgCAUUaGGU----GUAUUUCg -5'
24742 3' -45.7 NC_005264.1 + 155276 0.71 0.997896
Target:  5'- gGAGCCGCACGUG----GCG-GAAGCg -3'
miRNA:   3'- gCUUGGCGUGCAUuaggUGUaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 130328 0.71 0.997896
Target:  5'- uGggUCGCAuCGUGGUCCucuACGUcgacGGGGCa -3'
miRNA:   3'- gCuuGGCGU-GCAUUAGG---UGUA----UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 2899 0.71 0.99815
Target:  5'- gCGAACCGCACGgg--CCACccuUGucacgcuuggcugcGAGCu -3'
miRNA:   3'- -GCUUGGCGUGCauuaGGUGu--AU--------------UUCG- -5'
24742 3' -45.7 NC_005264.1 + 104076 0.71 0.998251
Target:  5'- cCGAccACCGCGCGUGcgCCucugauAGCg -3'
miRNA:   3'- -GCU--UGGCGUGCAUuaGGuguauuUCG- -5'
24742 3' -45.7 NC_005264.1 + 40215 0.71 0.998251
Target:  5'- gCGGGCCuGCAUGUAuUCCACGac--GCa -3'
miRNA:   3'- -GCUUGG-CGUGCAUuAGGUGUauuuCG- -5'
24742 3' -45.7 NC_005264.1 + 29137 0.71 0.998251
Target:  5'- uGAGgaGCGCGUGG-CCGCAUAGcuuGCa -3'
miRNA:   3'- gCUUggCGUGCAUUaGGUGUAUUu--CG- -5'
24742 3' -45.7 NC_005264.1 + 36372 0.7 0.998555
Target:  5'- aUGGACCGCGgggaGUAucUCCGCGcuAGGCg -3'
miRNA:   3'- -GCUUGGCGUg---CAUu-AGGUGUauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 71377 0.7 0.998555
Target:  5'- uGGGCaaCACGUuAUCCGCGcGGAGCg -3'
miRNA:   3'- gCUUGgcGUGCAuUAGGUGUaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 89771 0.7 0.998555
Target:  5'- aGAgauGCCGCGCGggccauccGUCCAUGUGcAGCc -3'
miRNA:   3'- gCU---UGGCGUGCau------UAGGUGUAUuUCG- -5'
24742 3' -45.7 NC_005264.1 + 125171 0.7 0.99874
Target:  5'- aGGGCCGCGCGcccGUCgCGCAUcgcgugcacgauguGGGGCa -3'
miRNA:   3'- gCUUGGCGUGCau-UAG-GUGUA--------------UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 6144 0.7 0.99874
Target:  5'- aGGGCCGCGCGcccGUCgCGCAUcgcgugcacgauguGGGGCa -3'
miRNA:   3'- gCUUGGCGUGCau-UAG-GUGUA--------------UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 64511 0.7 0.998813
Target:  5'- uGGACCGCGCuGUucuGUCCGCGccgccGCg -3'
miRNA:   3'- gCUUGGCGUG-CAu--UAGGUGUauuu-CG- -5'
24742 3' -45.7 NC_005264.1 + 55273 0.7 0.99903
Target:  5'- aGAGCUgggGCGCGcUAggCCGCAcguUAAAGCa -3'
miRNA:   3'- gCUUGG---CGUGC-AUuaGGUGU---AUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 133983 0.7 0.99903
Target:  5'- --cGCCGCGCG--GUCCAUAUAcAAGUu -3'
miRNA:   3'- gcuUGGCGUGCauUAGGUGUAU-UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.