miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24742 3' -45.7 NC_005264.1 + 146463 1.15 0.015063
Target:  5'- gCGAACCGCACGUAAUCCACAUAAAGCa -3'
miRNA:   3'- -GCUUGGCGUGCAUUAGGUGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 105355 0.78 0.91483
Target:  5'- gCGGcuGCUGCACGaGGUgCGCGUAAAGCu -3'
miRNA:   3'- -GCU--UGGCGUGCaUUAgGUGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 156515 0.77 0.926706
Target:  5'- aGGACUGCGUGUAcgCCACGcGAAGCc -3'
miRNA:   3'- gCUUGGCGUGCAUuaGGUGUaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 34259 0.76 0.951683
Target:  5'- -cGugCGCGCgGUAAUCCGCGUGcuGCg -3'
miRNA:   3'- gcUugGCGUG-CAUUAGGUGUAUuuCG- -5'
24742 3' -45.7 NC_005264.1 + 106250 0.76 0.959832
Target:  5'- uGGGCCGCGCGUAGcgCCagaaaaggACAUAAAGa -3'
miRNA:   3'- gCUUGGCGUGCAUUa-GG--------UGUAUUUCg -5'
24742 3' -45.7 NC_005264.1 + 151827 0.75 0.963529
Target:  5'- cCGGACCGCugccaugcuGCGgauUCCAC-UGAAGCg -3'
miRNA:   3'- -GCUUGGCG---------UGCauuAGGUGuAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 32801 0.75 0.963529
Target:  5'- cCGGACCGCugccaugcuGCGgauUCCAC-UGAAGCg -3'
miRNA:   3'- -GCUUGGCG---------UGCauuAGGUGuAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 60267 0.75 0.966981
Target:  5'- gCGAGCUGCG-GUGAgcgCCGCGUcgGGCa -3'
miRNA:   3'- -GCUUGGCGUgCAUUa--GGUGUAuuUCG- -5'
24742 3' -45.7 NC_005264.1 + 70120 0.75 0.966981
Target:  5'- uCGAGCUGcCGCGUAcucCCGCGUGcGGCa -3'
miRNA:   3'- -GCUUGGC-GUGCAUua-GGUGUAUuUCG- -5'
24742 3' -45.7 NC_005264.1 + 143166 0.75 0.97318
Target:  5'- aCGAGCCGCGCuuucaGAUgCCACGcgGAAGCu -3'
miRNA:   3'- -GCUUGGCGUGca---UUA-GGUGUa-UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 50947 0.74 0.984938
Target:  5'- gGAAUCGCGCGUGgccuucGUUCAUggGAAGCc -3'
miRNA:   3'- gCUUGGCGUGCAU------UAGGUGuaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 10938 0.73 0.986721
Target:  5'- gGAGCCGC-CGUccccuccgCCACAUAcAGCu -3'
miRNA:   3'- gCUUGGCGuGCAuua-----GGUGUAUuUCG- -5'
24742 3' -45.7 NC_005264.1 + 77527 0.73 0.989797
Target:  5'- aCGAACUGCAcuauccCGUccUCCGCGUAuuuGAGCu -3'
miRNA:   3'- -GCUUGGCGU------GCAuuAGGUGUAU---UUCG- -5'
24742 3' -45.7 NC_005264.1 + 126560 0.73 0.989797
Target:  5'- uCGcGCCGCgaagACGUGGUCCACucuucGGCa -3'
miRNA:   3'- -GCuUGGCG----UGCAUUAGGUGuauu-UCG- -5'
24742 3' -45.7 NC_005264.1 + 61515 0.73 0.991109
Target:  5'- aGcGCCGCGCGUAuAUCCAgAaAGAGUu -3'
miRNA:   3'- gCuUGGCGUGCAU-UAGGUgUaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 59809 0.73 0.992285
Target:  5'- gGAGCCGUACGUAG---ACGUGAGGg -3'
miRNA:   3'- gCUUGGCGUGCAUUaggUGUAUUUCg -5'
24742 3' -45.7 NC_005264.1 + 48027 0.73 0.992285
Target:  5'- aCGAccAUgGCGCGUGgccaAUgCGCAUGGAGCa -3'
miRNA:   3'- -GCU--UGgCGUGCAU----UAgGUGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 136734 0.72 0.993334
Target:  5'- aCGAGCCGCGCGguggCCAguUu-AGCu -3'
miRNA:   3'- -GCUUGGCGUGCauuaGGUguAuuUCG- -5'
24742 3' -45.7 NC_005264.1 + 28985 0.72 0.993334
Target:  5'- gGAGCCGCugG-AGUCCAUuaaaauauaauUGAAGUa -3'
miRNA:   3'- gCUUGGCGugCaUUAGGUGu----------AUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 92434 0.72 0.995813
Target:  5'- aCGAGCCGCACG--GUCU-CGUcAGGCc -3'
miRNA:   3'- -GCUUGGCGUGCauUAGGuGUAuUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.