miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24742 3' -45.7 NC_005264.1 + 41481 0.66 0.999993
Target:  5'- -uGugCGUACGUG---CGCGUAAAGCu -3'
miRNA:   3'- gcUugGCGUGCAUuagGUGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 110234 0.66 0.999985
Target:  5'- aCGAuuCCaagGCAUGUcagccAAUCCACGUAgcGCg -3'
miRNA:   3'- -GCUu-GG---CGUGCA-----UUAGGUGUAUuuCG- -5'
24742 3' -45.7 NC_005264.1 + 25836 0.66 0.999985
Target:  5'- cCGAACagGCugGa----CGCAUGAAGCg -3'
miRNA:   3'- -GCUUGg-CGugCauuagGUGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 2529 0.66 0.999995
Target:  5'- gGGugCGCAgaacaccuuCGUGGUCCACGaucuUGuGGCc -3'
miRNA:   3'- gCUugGCGU---------GCAUUAGGUGU----AUuUCG- -5'
24742 3' -45.7 NC_005264.1 + 125540 0.66 0.99999
Target:  5'- cCGGucuuGCCGUaguacACGUAAUCgGCGgcagGGGGCu -3'
miRNA:   3'- -GCU----UGGCG-----UGCAUUAGgUGUa---UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 39809 0.66 0.999993
Target:  5'- gCGAugcGCgGCACGc-AUCCGCcuagAUGGAGCc -3'
miRNA:   3'- -GCU---UGgCGUGCauUAGGUG----UAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 88695 0.66 0.999995
Target:  5'- cCGAagcaGCUGCgugGCGUGcaugCCGCAUGAGGa -3'
miRNA:   3'- -GCU----UGGCG---UGCAUua--GGUGUAUUUCg -5'
24742 3' -45.7 NC_005264.1 + 14276 0.66 0.999995
Target:  5'- uCGGGCaCGuCGCGgg--CCACGagGAAGCa -3'
miRNA:   3'- -GCUUG-GC-GUGCauuaGGUGUa-UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 137850 0.66 0.999996
Target:  5'- uGAGCCGCAgGggGUacggggacaaCCGCAggucucgcgGGAGCg -3'
miRNA:   3'- gCUUGGCGUgCauUA----------GGUGUa--------UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 118115 0.66 0.99999
Target:  5'- uGGAUCGC-UGU-AUCCGCGU-AGGCc -3'
miRNA:   3'- gCUUGGCGuGCAuUAGGUGUAuUUCG- -5'
24742 3' -45.7 NC_005264.1 + 78758 0.66 0.999985
Target:  5'- aGAugCGCcCGcUGcUCCGCAUGAgccagggGGCg -3'
miRNA:   3'- gCUugGCGuGC-AUuAGGUGUAUU-------UCG- -5'
24742 3' -45.7 NC_005264.1 + 152829 0.66 0.999995
Target:  5'- cCGAACgGCGCGgg--CUACG--GGGCu -3'
miRNA:   3'- -GCUUGgCGUGCauuaGGUGUauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 47905 0.66 0.999993
Target:  5'- aGAAUuuaCGCACGUGugcCCGCG--GAGCc -3'
miRNA:   3'- gCUUG---GCGUGCAUua-GGUGUauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 7775 0.66 0.99999
Target:  5'- aGGACgGCuucaGCGUGauGUCCAgGUcuAGCg -3'
miRNA:   3'- gCUUGgCG----UGCAU--UAGGUgUAuuUCG- -5'
24742 3' -45.7 NC_005264.1 + 144392 0.66 0.999996
Target:  5'- aGGcCCGaCGCGU--UCCGCAUuAAGUu -3'
miRNA:   3'- gCUuGGC-GUGCAuuAGGUGUAuUUCG- -5'
24742 3' -45.7 NC_005264.1 + 95326 0.66 0.999995
Target:  5'- gGGACgUGUcucGCGUGAUCCGaggcaAUGGGGCc -3'
miRNA:   3'- gCUUG-GCG---UGCAUUAGGUg----UAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 41581 0.66 0.999985
Target:  5'- gGAACCGCucgACGUGgcGUCUaaACAU-GGGCc -3'
miRNA:   3'- gCUUGGCG---UGCAU--UAGG--UGUAuUUCG- -5'
24742 3' -45.7 NC_005264.1 + 103483 0.66 0.999995
Target:  5'- aUGggUCGCguGCGcagucUGAUCCGCGacAGGCu -3'
miRNA:   3'- -GCuuGGCG--UGC-----AUUAGGUGUauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 86741 0.66 0.99999
Target:  5'- uGAuGCCGCGCuGUucgcgCC-CGUAGAGCc -3'
miRNA:   3'- gCU-UGGCGUG-CAuua--GGuGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 151000 0.66 0.99999
Target:  5'- aCGGGCCGCGUGUccGAUgCGCGcUAcAGCg -3'
miRNA:   3'- -GCUUGGCGUGCA--UUAgGUGU-AUuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.