miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24742 3' -45.7 NC_005264.1 + 125171 0.7 0.99874
Target:  5'- aGGGCCGCGCGcccGUCgCGCAUcgcgugcacgauguGGGGCa -3'
miRNA:   3'- gCUUGGCGUGCau-UAG-GUGUA--------------UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 155276 0.71 0.997896
Target:  5'- gGAGCCGCACGUG----GCG-GAAGCg -3'
miRNA:   3'- gCUUGGCGUGCAUuaggUGUaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 5872 0.71 0.997896
Target:  5'- cCGcGCCGCgaGCGUGGUCCAguaguUGAGGUa -3'
miRNA:   3'- -GCuUGGCG--UGCAUUAGGUgu---AUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 115812 0.71 0.997896
Target:  5'- gGGACCGCgggaggccGCGU--UCCACcGUGAGGUg -3'
miRNA:   3'- gCUUGGCG--------UGCAuuAGGUG-UAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 138181 0.71 0.997896
Target:  5'- uCGAACCGCAgGUGG-CCAgaacCGUGGGGa -3'
miRNA:   3'- -GCUUGGCGUgCAUUaGGU----GUAUUUCg -5'
24742 3' -45.7 NC_005264.1 + 2899 0.71 0.99815
Target:  5'- gCGAACCGCACGgg--CCACccuUGucacgcuuggcugcGAGCu -3'
miRNA:   3'- -GCUUGGCGUGCauuaGGUGu--AU--------------UUCG- -5'
24742 3' -45.7 NC_005264.1 + 29137 0.71 0.998251
Target:  5'- uGAGgaGCGCGUGG-CCGCAUAGcuuGCa -3'
miRNA:   3'- gCUUggCGUGCAUUaGGUGUAUUu--CG- -5'
24742 3' -45.7 NC_005264.1 + 40215 0.71 0.998251
Target:  5'- gCGGGCCuGCAUGUAuUCCACGac--GCa -3'
miRNA:   3'- -GCUUGG-CGUGCAUuAGGUGUauuuCG- -5'
24742 3' -45.7 NC_005264.1 + 36372 0.7 0.998555
Target:  5'- aUGGACCGCGgggaGUAucUCCGCGcuAGGCg -3'
miRNA:   3'- -GCUUGGCGUg---CAUu-AGGUGUauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 136897 0.71 0.997482
Target:  5'- uGGGCgCGUACGUGAgCCGCGUcguGCa -3'
miRNA:   3'- gCUUG-GCGUGCAUUaGGUGUAuuuCG- -5'
24742 3' -45.7 NC_005264.1 + 146508 0.71 0.997001
Target:  5'- uGGGCCGCGCGgu-UCCA----GAGCu -3'
miRNA:   3'- gCUUGGCGUGCauuAGGUguauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 28985 0.72 0.993334
Target:  5'- gGAGCCGCugG-AGUCCAUuaaaauauaauUGAAGUa -3'
miRNA:   3'- gCUUGGCGugCaUUAGGUGu----------AUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 105355 0.78 0.91483
Target:  5'- gCGGcuGCUGCACGaGGUgCGCGUAAAGCu -3'
miRNA:   3'- -GCU--UGGCGUGCaUUAgGUGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 34259 0.76 0.951683
Target:  5'- -cGugCGCGCgGUAAUCCGCGUGcuGCg -3'
miRNA:   3'- gcUugGCGUG-CAUUAGGUGUAUuuCG- -5'
24742 3' -45.7 NC_005264.1 + 151827 0.75 0.963529
Target:  5'- cCGGACCGCugccaugcuGCGgauUCCAC-UGAAGCg -3'
miRNA:   3'- -GCUUGGCG---------UGCauuAGGUGuAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 60267 0.75 0.966981
Target:  5'- gCGAGCUGCG-GUGAgcgCCGCGUcgGGCa -3'
miRNA:   3'- -GCUUGGCGUgCAUUa--GGUGUAuuUCG- -5'
24742 3' -45.7 NC_005264.1 + 10938 0.73 0.986721
Target:  5'- gGAGCCGC-CGUccccuccgCCACAUAcAGCu -3'
miRNA:   3'- gCUUGGCGuGCAuua-----GGUGUAUuUCG- -5'
24742 3' -45.7 NC_005264.1 + 61515 0.73 0.991109
Target:  5'- aGcGCCGCGCGUAuAUCCAgAaAGAGUu -3'
miRNA:   3'- gCuUGGCGUGCAU-UAGGUgUaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 59809 0.73 0.992285
Target:  5'- gGAGCCGUACGUAG---ACGUGAGGg -3'
miRNA:   3'- gCUUGGCGUGCAUUaggUGUAUUUCg -5'
24742 3' -45.7 NC_005264.1 + 48027 0.73 0.992285
Target:  5'- aCGAccAUgGCGCGUGgccaAUgCGCAUGGAGCa -3'
miRNA:   3'- -GCU--UGgCGUGCAU----UAgGUGUAUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.