miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24742 3' -45.7 NC_005264.1 + 1197 0.68 0.999911
Target:  5'- gCGGACCGgGCG---UCCGCGgccauGGCu -3'
miRNA:   3'- -GCUUGGCgUGCauuAGGUGUauu--UCG- -5'
24742 3' -45.7 NC_005264.1 + 2529 0.66 0.999995
Target:  5'- gGGugCGCAgaacaccuuCGUGGUCCACGaucuUGuGGCc -3'
miRNA:   3'- gCUugGCGU---------GCAUUAGGUGU----AUuUCG- -5'
24742 3' -45.7 NC_005264.1 + 2899 0.71 0.99815
Target:  5'- gCGAACCGCACGgg--CCACccuUGucacgcuuggcugcGAGCu -3'
miRNA:   3'- -GCUUGGCGUGCauuaGGUGu--AU--------------UUCG- -5'
24742 3' -45.7 NC_005264.1 + 3271 0.67 0.999972
Target:  5'- gGAGCCGCA---GcgCCACGUcccuGGGCg -3'
miRNA:   3'- gCUUGGCGUgcaUuaGGUGUAu---UUCG- -5'
24742 3' -45.7 NC_005264.1 + 3301 0.67 0.99998
Target:  5'- uGAGCuCGCGCGgGAUCgCGCGccgUGcAAGCg -3'
miRNA:   3'- gCUUG-GCGUGCaUUAG-GUGU---AU-UUCG- -5'
24742 3' -45.7 NC_005264.1 + 4275 0.69 0.999748
Target:  5'- gGAACCGCGgGgcggCgGCAgAGAGCa -3'
miRNA:   3'- gCUUGGCGUgCauuaGgUGUaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 5624 0.68 0.999804
Target:  5'- uCGGGCCGCGCGacgcUAGguguccCCACAgcgcGGCg -3'
miRNA:   3'- -GCUUGGCGUGC----AUUa-----GGUGUauu-UCG- -5'
24742 3' -45.7 NC_005264.1 + 5872 0.71 0.997896
Target:  5'- cCGcGCCGCgaGCGUGGUCCAguaguUGAGGUa -3'
miRNA:   3'- -GCuUGGCG--UGCAUUAGGUgu---AUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 6144 0.7 0.99874
Target:  5'- aGGGCCGCGCGcccGUCgCGCAUcgcgugcacgauguGGGGCa -3'
miRNA:   3'- gCUUGGCGUGCau-UAG-GUGUA--------------UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 6513 0.66 0.99999
Target:  5'- cCGGucuuGCCGUaguacACGUAAUCgGCGgcagGGGGCu -3'
miRNA:   3'- -GCU----UGGCG-----UGCAUUAGgUGUa---UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 6893 0.67 0.999972
Target:  5'- gCGAGCCGCGC--AGUCC-CAgcgcGCg -3'
miRNA:   3'- -GCUUGGCGUGcaUUAGGuGUauuuCG- -5'
24742 3' -45.7 NC_005264.1 + 7775 0.66 0.99999
Target:  5'- aGGACgGCuucaGCGUGauGUCCAgGUcuAGCg -3'
miRNA:   3'- gCUUGgCG----UGCAU--UAGGUgUAuuUCG- -5'
24742 3' -45.7 NC_005264.1 + 9013 0.68 0.999911
Target:  5'- gCGAGCCGC-CGuUAGUCCcgacGCGUuc-GCg -3'
miRNA:   3'- -GCUUGGCGuGC-AUUAGG----UGUAuuuCG- -5'
24742 3' -45.7 NC_005264.1 + 10556 0.69 0.999585
Target:  5'- gCGGAUCGCGCGUucgccgcuGcuuccucguuccuUCCugGUAGGGCc -3'
miRNA:   3'- -GCUUGGCGUGCAu-------U-------------AGGugUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 10846 0.68 0.999933
Target:  5'- gCGAGCC-CGCGUGucUCCGCAguuuuuauGCu -3'
miRNA:   3'- -GCUUGGcGUGCAUu-AGGUGUauuu----CG- -5'
24742 3' -45.7 NC_005264.1 + 10938 0.73 0.986721
Target:  5'- gGAGCCGC-CGUccccuccgCCACAUAcAGCu -3'
miRNA:   3'- gCUUGGCGuGCAuua-----GGUGUAUuUCG- -5'
24742 3' -45.7 NC_005264.1 + 12377 0.67 0.999972
Target:  5'- uGAuaaCGCAUGUucgcgcuUCCagGCAUGAGGCg -3'
miRNA:   3'- gCUug-GCGUGCAuu-----AGG--UGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 12676 0.67 0.999972
Target:  5'- aGAACCGCACG-GGUCCGuCGc----- -3'
miRNA:   3'- gCUUGGCGUGCaUUAGGU-GUauuucg -5'
24742 3' -45.7 NC_005264.1 + 12776 0.68 0.999933
Target:  5'- aCGcAGCCGCACGa---CCGCu--AGGCg -3'
miRNA:   3'- -GC-UUGGCGUGCauuaGGUGuauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 14276 0.66 0.999995
Target:  5'- uCGGGCaCGuCGCGgg--CCACGagGAAGCa -3'
miRNA:   3'- -GCUUG-GC-GUGCauuaGGUGUa-UUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.