miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 85355 0.7 0.877363
Target:  5'- uCGCUCGcAGCgacugcgagguuccgUCGCGUccaucGUACACCUACg -3'
miRNA:   3'- -GCGAGCuUUG---------------AGUGCG-----CGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 154123 0.7 0.881693
Target:  5'- aGC-CGAAACggcggcCACGCGCGCGCagaGCg -3'
miRNA:   3'- gCGaGCUUUGa-----GUGCGCGUGUGga-UG- -5'
24743 3' -52.9 NC_005264.1 + 10695 0.7 0.888724
Target:  5'- --gUCGAuguACUC-CGUGCugGCCUACc -3'
miRNA:   3'- gcgAGCUu--UGAGuGCGCGugUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 66512 0.7 0.891472
Target:  5'- gCGCUCGAcgAGCUCGCuuucGCGCaguacagcaacgcggACGCCgagGCg -3'
miRNA:   3'- -GCGAGCU--UUGAGUG----CGCG---------------UGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 95855 0.69 0.895522
Target:  5'- uCGC-CGuuGCUCGCccagGCGUACACCaACg -3'
miRNA:   3'- -GCGaGCuuUGAGUG----CGCGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 116879 0.69 0.902082
Target:  5'- aGCUUacuGCUCGCGCGCuguuuUACCUAg -3'
miRNA:   3'- gCGAGcuuUGAGUGCGCGu----GUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 47598 0.69 0.902082
Target:  5'- aCGCguuggggGAGACUCGCGCGaacgGCGCgUACa -3'
miRNA:   3'- -GCGag-----CUUUGAGUGCGCg---UGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 50550 0.69 0.902082
Target:  5'- gGCcugUCGAAGCU-AgGCGCGCGCgUGCg -3'
miRNA:   3'- gCG---AGCUUUGAgUgCGCGUGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 7861 0.69 0.902082
Target:  5'- aGCUgCGAGGCcccCACGUucgcuGCGCAUCUGCg -3'
miRNA:   3'- gCGA-GCUUUGa--GUGCG-----CGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 49429 0.69 0.9084
Target:  5'- cCGCacaUGGAGCUCucugccguCGCGCAgcuCGCCUGCa -3'
miRNA:   3'- -GCGa--GCUUUGAGu-------GCGCGU---GUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 86454 0.69 0.910859
Target:  5'- aCGCccUCGAGGCgaaCACGUGguuagcggguaccaaCGCGCCUGCg -3'
miRNA:   3'- -GCG--AGCUUUGa--GUGCGC---------------GUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 3289 0.69 0.914475
Target:  5'- gCGCcagagUCGuGAGCUCGCGCgggaucGCGCGCCgUGCa -3'
miRNA:   3'- -GCG-----AGC-UUUGAGUGCG------CGUGUGG-AUG- -5'
24743 3' -52.9 NC_005264.1 + 151 0.69 0.919732
Target:  5'- aCGC-CGgcGCgcaGCGCGCcgaccguACACCUACg -3'
miRNA:   3'- -GCGaGCuuUGag-UGCGCG-------UGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 119178 0.69 0.919732
Target:  5'- aCGC-CGgcGCgcaGCGCGCcgaccguACACCUACg -3'
miRNA:   3'- -GCGaGCuuUGag-UGCGCG-------UGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 81764 0.69 0.920304
Target:  5'- aGCaCGAGACgugCGCGCaGCAUACCg-- -3'
miRNA:   3'- gCGaGCUUUGa--GUGCG-CGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 117882 0.69 0.920304
Target:  5'- cCGCUCuaccacgaaGGGAgUCACGCGCGCaacggGCCcGCg -3'
miRNA:   3'- -GCGAG---------CUUUgAGUGCGCGUG-----UGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 49497 0.69 0.920304
Target:  5'- uGCguagCGGGuuuacAUUCAUGCGCAggUACCUGCa -3'
miRNA:   3'- gCGa---GCUU-----UGAGUGCGCGU--GUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 111033 0.68 0.925886
Target:  5'- gGUUCGAAgcggugGCUCGCGCGgACucGCCggACg -3'
miRNA:   3'- gCGAGCUU------UGAGUGCGCgUG--UGGa-UG- -5'
24743 3' -52.9 NC_005264.1 + 39092 0.68 0.925886
Target:  5'- uGUUCuccuAGCUgCcCGUGCACGCCUACg -3'
miRNA:   3'- gCGAGcu--UUGA-GuGCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 152255 0.68 0.933285
Target:  5'- uCGCggucgCGGAcuuggccaggauuuuGCUUAUGuUGCGCGCCUGCg -3'
miRNA:   3'- -GCGa----GCUU---------------UGAGUGC-GCGUGUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.