miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24745 3' -53.5 NC_005264.1 + 142685 0.65 0.981121
Target:  5'- gCCGCGAUcuugggcgccggcgGCGC-GCCaCGCCugcCCGCa -3'
miRNA:   3'- -GGUGUUG--------------UGCGaUGGaGCGGuu-GGCG- -5'
24745 3' -53.5 NC_005264.1 + 74150 0.65 0.981121
Target:  5'- aCGCcACGCaGCUGCUUCGgCCucuuggauuggcggGGCCGUa -3'
miRNA:   3'- gGUGuUGUG-CGAUGGAGC-GG--------------UUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 15342 0.66 0.980486
Target:  5'- aCACgGAUGCGUgcggaACCUCuGCCAcacacuagccccgguGCCGCa -3'
miRNA:   3'- gGUG-UUGUGCGa----UGGAG-CGGU---------------UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 79552 0.66 0.980486
Target:  5'- gCCGCAcCGCgGCaagGCCUUGCgGccgaaauugaaguucGCCGCg -3'
miRNA:   3'- -GGUGUuGUG-CGa--UGGAGCGgU---------------UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 150699 0.66 0.980486
Target:  5'- gCGCGAgGCagggcucucggcgggGCUGCC-CGCCAAaggUCGCg -3'
miRNA:   3'- gGUGUUgUG---------------CGAUGGaGCGGUU---GGCG- -5'
24745 3' -53.5 NC_005264.1 + 31673 0.66 0.980486
Target:  5'- gCGCGAgGCagggcucucggcgggGCUGCC-CGCCAAaggUCGCg -3'
miRNA:   3'- gGUGUUgUG---------------CGAUGGaGCGGUU---GGCG- -5'
24745 3' -53.5 NC_005264.1 + 62279 0.66 0.980271
Target:  5'- aUCGCGGCACGCUucaacaugcccgcgaGCgUCGuCCGGacuagacCCGCc -3'
miRNA:   3'- -GGUGUUGUGCGA---------------UGgAGC-GGUU-------GGCG- -5'
24745 3' -53.5 NC_005264.1 + 140978 0.66 0.979615
Target:  5'- aCUACAACA-GUUgaACCUCGaCCAGCgGg -3'
miRNA:   3'- -GGUGUUGUgCGA--UGGAGC-GGUUGgCg -5'
24745 3' -53.5 NC_005264.1 + 68447 0.66 0.979615
Target:  5'- gCCGCGgucuGCGCGCggaggGCCUCcacuaauauugGCCAgGCgGCu -3'
miRNA:   3'- -GGUGU----UGUGCGa----UGGAG-----------CGGU-UGgCG- -5'
24745 3' -53.5 NC_005264.1 + 139250 0.66 0.979615
Target:  5'- aCCGCGAgACGaCUGcCCUCuGCaagaaGAuCCGCa -3'
miRNA:   3'- -GGUGUUgUGC-GAU-GGAG-CGg----UU-GGCG- -5'
24745 3' -53.5 NC_005264.1 + 141527 0.66 0.979615
Target:  5'- gCCACAAC-UGC-ACCcauaagucCGCCAugguCCGCg -3'
miRNA:   3'- -GGUGUUGuGCGaUGGa-------GCGGUu---GGCG- -5'
24745 3' -53.5 NC_005264.1 + 5824 0.66 0.979615
Target:  5'- cCgGCGGCGguggcCGCca-CUCGCCuGGCCGCg -3'
miRNA:   3'- -GgUGUUGU-----GCGaugGAGCGG-UUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 94651 0.66 0.979615
Target:  5'- cCCAUggAGCACGUaGCCaugaacgUGCCcGCCGUg -3'
miRNA:   3'- -GGUG--UUGUGCGaUGGa------GCGGuUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 124850 0.66 0.979615
Target:  5'- cCgGCGGCGguggcCGCca-CUCGCCuGGCCGCg -3'
miRNA:   3'- -GgUGUUGU-----GCGaugGAGCGG-UUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 48229 0.66 0.979615
Target:  5'- gCugGGCAUGuCUGCCUgCGgCAAgCGUg -3'
miRNA:   3'- gGugUUGUGC-GAUGGA-GCgGUUgGCG- -5'
24745 3' -53.5 NC_005264.1 + 132915 0.66 0.979615
Target:  5'- gCGCAGCG-GCgUACCUCccuagcGCCGacgggguagcGCCGCa -3'
miRNA:   3'- gGUGUUGUgCG-AUGGAG------CGGU----------UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 157182 0.66 0.979615
Target:  5'- aCGCAGCAUGCgUGCgaCuaCcGCCGCg -3'
miRNA:   3'- gGUGUUGUGCG-AUGgaGcgGuUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 115275 0.66 0.979615
Target:  5'- gCCAUAucugGCACGagGCCuUCGUCAcagaaaucuACCGCg -3'
miRNA:   3'- -GGUGU----UGUGCgaUGG-AGCGGU---------UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 66784 0.66 0.979615
Target:  5'- cCCACGuuccuaACACGgUcccGCCUgGgCCAGCgGCg -3'
miRNA:   3'- -GGUGU------UGUGCgA---UGGAgC-GGUUGgCG- -5'
24745 3' -53.5 NC_005264.1 + 62807 0.66 0.979615
Target:  5'- uCCACcGgACGCaGCagCGCC-GCCGCg -3'
miRNA:   3'- -GGUGuUgUGCGaUGgaGCGGuUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.