miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24748 3' -59 NC_005264.1 + 81890 0.66 0.803952
Target:  5'- gCGCCUUGGCGGCGAUgGgcgGGcGAGc- -3'
miRNA:   3'- aGUGGGGUCGCCGCUGgCa--CC-CUUuu -5'
24748 3' -59 NC_005264.1 + 145542 0.66 0.795141
Target:  5'- cUCGCgCUAGCGGUaACCGUGGc---- -3'
miRNA:   3'- -AGUGgGGUCGCCGcUGGCACCcuuuu -5'
24748 3' -59 NC_005264.1 + 92991 0.66 0.795141
Target:  5'- gCGCCgCAGCacGCGGCCGUagcGGGGGc- -3'
miRNA:   3'- aGUGGgGUCGc-CGCUGGCA---CCCUUuu -5'
24748 3' -59 NC_005264.1 + 15283 0.66 0.786188
Target:  5'- aCACgUCGGCGGCcacuucgcGCCGcGGGAAAGa -3'
miRNA:   3'- aGUGgGGUCGCCGc-------UGGCaCCCUUUU- -5'
24748 3' -59 NC_005264.1 + 96050 0.66 0.786188
Target:  5'- -gGCCCaGGCGG-GACCGUguuaggaacguGGGAGGAc -3'
miRNA:   3'- agUGGGgUCGCCgCUGGCA-----------CCCUUUU- -5'
24748 3' -59 NC_005264.1 + 158242 0.66 0.786188
Target:  5'- aCGCCgCC-GCGGCG-CUGgcgGGGAGGg -3'
miRNA:   3'- aGUGG-GGuCGCCGCuGGCa--CCCUUUu -5'
24748 3' -59 NC_005264.1 + 39215 0.66 0.786188
Target:  5'- aCGCCgCC-GCGGCG-CUGgcgGGGAGGg -3'
miRNA:   3'- aGUGG-GGuCGCCGCuGGCa--CCCUUUu -5'
24748 3' -59 NC_005264.1 + 129900 0.66 0.7771
Target:  5'- -uGCUgCuGCGaGgGGCCGUGGGGAAu -3'
miRNA:   3'- agUGGgGuCGC-CgCUGGCACCCUUUu -5'
24748 3' -59 NC_005264.1 + 92533 0.66 0.7771
Target:  5'- gCGCgCCGGCGGgGAacaagauggaGUGGGGGAAg -3'
miRNA:   3'- aGUGgGGUCGCCgCUgg--------CACCCUUUU- -5'
24748 3' -59 NC_005264.1 + 10874 0.66 0.7771
Target:  5'- -uGCUgCuGCGaGgGGCCGUGGGGAAu -3'
miRNA:   3'- agUGGgGuCGC-CgCUGGCACCCUUUu -5'
24748 3' -59 NC_005264.1 + 6008 0.66 0.767888
Target:  5'- -gGCCCCgacgGGCGGgGAggcuCCG-GGGAAAAc -3'
miRNA:   3'- agUGGGG----UCGCCgCU----GGCaCCCUUUU- -5'
24748 3' -59 NC_005264.1 + 6902 0.66 0.767888
Target:  5'- gCAgUCCCAGCGcGCGGcuuuCCGUGGGc--- -3'
miRNA:   3'- aGU-GGGGUCGC-CGCU----GGCACCCuuuu -5'
24748 3' -59 NC_005264.1 + 125035 0.66 0.767888
Target:  5'- -gGCCCCgacgGGCGGgGAggcuCCG-GGGAAAAc -3'
miRNA:   3'- agUGGGG----UCGCCgCU----GGCaCCCUUUU- -5'
24748 3' -59 NC_005264.1 + 974 0.66 0.758558
Target:  5'- -aGCCCCuGgGGCGGCagGUGGGc--- -3'
miRNA:   3'- agUGGGGuCgCCGCUGg-CACCCuuuu -5'
24748 3' -59 NC_005264.1 + 137935 0.66 0.758558
Target:  5'- gUCACCCCAGCGacGCGACUauacGAAGAg -3'
miRNA:   3'- -AGUGGGGUCGC--CGCUGGcaccCUUUU- -5'
24748 3' -59 NC_005264.1 + 69688 0.66 0.758558
Target:  5'- gCGCCCCGaCGGUGACU--GGGAAc- -3'
miRNA:   3'- aGUGGGGUcGCCGCUGGcaCCCUUuu -5'
24748 3' -59 NC_005264.1 + 120000 0.66 0.758558
Target:  5'- -aGCCCCuGgGGCGGCagGUGGGc--- -3'
miRNA:   3'- agUGGGGuCgCCGCUGg-CACCCuuuu -5'
24748 3' -59 NC_005264.1 + 127682 0.67 0.749121
Target:  5'- cUugCCCAccagacacaccGCGGCcaGGCCG-GGGAAGAa -3'
miRNA:   3'- aGugGGGU-----------CGCCG--CUGGCaCCCUUUU- -5'
24748 3' -59 NC_005264.1 + 125610 0.67 0.733818
Target:  5'- gCcCCCCAGgggccgacaggucaaCGGCGAgCgCGUGGGAAAu -3'
miRNA:   3'- aGuGGGGUC---------------GCCGCU-G-GCACCCUUUu -5'
24748 3' -59 NC_005264.1 + 6583 0.67 0.733818
Target:  5'- gCcCCCCAGgggccgacaggucaaCGGCGAgCgCGUGGGAAAu -3'
miRNA:   3'- aGuGGGGUC---------------GCCGCU-G-GCACCCUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.