Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24750 | 3' | -62.6 | NC_005264.1 | + | 160908 | 0.69 | 0.476059 |
Target: 5'- gGCCGCGCacagacucuugccggAGGAugggauCCCGCagucgCGGCGGGg -3' miRNA: 3'- gCGGCGUG---------------UCCU------GGGCGa----GCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 157391 | 0.66 | 0.642803 |
Target: 5'- gGgCGguUAGGACCUcCUcCGGCGAGa -3' miRNA: 3'- gCgGCguGUCCUGGGcGA-GCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 153453 | 0.68 | 0.536816 |
Target: 5'- gCGCUGCACgAGGACCucauaaucgCGCUCGGgaCGAu- -3' miRNA: 3'- -GCGGCGUG-UCCUGG---------GCGAGCC--GCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 152878 | 0.67 | 0.57493 |
Target: 5'- uCGCCGCACGGGuCCggcagucccuCGC-CGGCGu-- -3' miRNA: 3'- -GCGGCGUGUCCuGG----------GCGaGCCGCuca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 152322 | 1.07 | 0.00115 |
Target: 5'- gCGCCGCACAGGACCCGCUCGGCGAGUa -3' miRNA: 3'- -GCGGCGUGUCCUGGGCGAGCCGCUCA- -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 136478 | 0.67 | 0.565333 |
Target: 5'- gCGCCGCGCA--GCCUGCcgCGGCGc-- -3' miRNA: 3'- -GCGGCGUGUccUGGGCGa-GCCGCuca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 131016 | 0.67 | 0.559595 |
Target: 5'- gCGCgGCACGGcagaguacgcgucacGACCUGCggCGGCGAc- -3' miRNA: 3'- -GCGgCGUGUC---------------CUGGGCGa-GCCGCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 129007 | 0.66 | 0.632103 |
Target: 5'- gCGgCGCGCAGGGgaauagcuacagcCuuGC-CGGCGAGc -3' miRNA: 3'- -GCgGCGUGUCCU-------------GggCGaGCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 128979 | 0.66 | 0.623349 |
Target: 5'- aCGCCgGCgagggacuGCcGGACCCGUgCGGCGAu- -3' miRNA: 3'- -GCGG-CG--------UGuCCUGGGCGaGCCGCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 124306 | 0.66 | 0.612656 |
Target: 5'- gGCCGgACGGcggggcggcggcuGACCCGUggGGCGGGc -3' miRNA: 3'- gCGGCgUGUC-------------CUGGGCGagCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 123293 | 0.77 | 0.156738 |
Target: 5'- uGCCGCGCGGGAaCCGCggggCGGCGGc- -3' miRNA: 3'- gCGGCGUGUCCUgGGCGa---GCCGCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 122637 | 0.7 | 0.395961 |
Target: 5'- cCGCCGCGgGGGG-CCGCgagGGCGGGc -3' miRNA: 3'- -GCGGCGUgUCCUgGGCGag-CCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 122624 | 0.66 | 0.623349 |
Target: 5'- gCGUCGUggaauacauGCAGG-CCCGCUCGGUc--- -3' miRNA: 3'- -GCGGCG---------UGUCCuGGGCGAGCCGcuca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 122101 | 0.73 | 0.293997 |
Target: 5'- uCGCCGCgACuggcggcggccgAGGACCCGUUCgGGCGAu- -3' miRNA: 3'- -GCGGCG-UG------------UCCUGGGCGAG-CCGCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 119501 | 0.73 | 0.293997 |
Target: 5'- gGCUGCGCAGGGCgUGCUCcgaGGCGGc- -3' miRNA: 3'- gCGGCGUGUCCUGgGCGAG---CCGCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 113881 | 0.68 | 0.518084 |
Target: 5'- gCGCCuacugcuuggaGCGCAGcGGCCCGCacaagugcccaUCGGgCGAGa -3' miRNA: 3'- -GCGG-----------CGUGUC-CUGGGCG-----------AGCC-GCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 109887 | 0.75 | 0.203901 |
Target: 5'- cCGCCGCGUAGaGGCgCUGCaUCGGCGAGUc -3' miRNA: 3'- -GCGGCGUGUC-CUG-GGCG-AGCCGCUCA- -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 108617 | 0.67 | 0.57493 |
Target: 5'- gGCCGCcucgacACAGGcCUCuaUUGGCGAGg -3' miRNA: 3'- gCGGCG------UGUCCuGGGcgAGCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 104334 | 0.75 | 0.218749 |
Target: 5'- aCGCCGCuuacgaGgAGGugCCGCUCaGGCGGGc -3' miRNA: 3'- -GCGGCG------UgUCCugGGCGAG-CCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 103388 | 0.69 | 0.489585 |
Target: 5'- uGCCGCGCGGGGCC-GCUuugacaaaucguaCGGUGcGUg -3' miRNA: 3'- gCGGCGUGUCCUGGgCGA-------------GCCGCuCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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