miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24750 3' -62.6 NC_005264.1 + 34478 0.68 0.518084
Target:  5'- gCGCgCGCuuCAGGAggaCGUUCGGCGGGa -3'
miRNA:   3'- -GCG-GCGu-GUCCUgg-GCGAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 1577 0.69 0.463604
Target:  5'- gGCUGCA-GGGACCU-CUCGGUGGGg -3'
miRNA:   3'- gCGGCGUgUCCUGGGcGAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 58029 0.69 0.463604
Target:  5'- cCGUCGUGCGGcGCCCGCUCGucucGCGAa- -3'
miRNA:   3'- -GCGGCGUGUCcUGGGCGAGC----CGCUca -5'
24750 3' -62.6 NC_005264.1 + 38413 0.69 0.463604
Target:  5'- gGCCGCGgAGcACgCGCUCuGCGAGUu -3'
miRNA:   3'- gCGGCGUgUCcUGgGCGAGcCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 99748 0.69 0.463604
Target:  5'- --aCGCAUguuGGACUCGCcCGGCGAGg -3'
miRNA:   3'- gcgGCGUGu--CCUGGGCGaGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 4261 0.69 0.463604
Target:  5'- cCGCCGCGCAGcGAgUCUGUUCGGCc--- -3'
miRNA:   3'- -GCGGCGUGUC-CU-GGGCGAGCCGcuca -5'
24750 3' -62.6 NC_005264.1 + 160908 0.69 0.476059
Target:  5'- gGCCGCGCacagacucuugccggAGGAugggauCCCGCagucgCGGCGGGg -3'
miRNA:   3'- gCGGCGUG---------------UCCU------GGGCGa----GCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 48150 0.69 0.490493
Target:  5'- aGaCCGCGCAau-CCUGCUCGGCGuGg -3'
miRNA:   3'- gC-GGCGUGUccuGGGCGAGCCGCuCa -5'
24750 3' -62.6 NC_005264.1 + 113881 0.68 0.518084
Target:  5'- gCGCCuacugcuuggaGCGCAGcGGCCCGCacaagugcccaUCGGgCGAGa -3'
miRNA:   3'- -GCGG-----------CGUGUC-CUGGGCG-----------AGCC-GCUCa -5'
24750 3' -62.6 NC_005264.1 + 70673 0.69 0.454814
Target:  5'- gCGCCGCcgGCAGGcaauuuuuacGCCCGCg-GGCGAc- -3'
miRNA:   3'- -GCGGCG--UGUCC----------UGGGCGagCCGCUca -5'
24750 3' -62.6 NC_005264.1 + 16426 0.7 0.404066
Target:  5'- gGCCGCucgacugccGCGGGGCCUGC-CcGCGGGUg -3'
miRNA:   3'- gCGGCG---------UGUCCUGGGCGaGcCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 122637 0.7 0.395961
Target:  5'- cCGCCGCGgGGGG-CCGCgagGGCGGGc -3'
miRNA:   3'- -GCGGCGUgUCCUgGGCGag-CCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 123293 0.77 0.156738
Target:  5'- uGCCGCGCGGGAaCCGCggggCGGCGGc- -3'
miRNA:   3'- gCGGCGUGUCCUgGGCGa---GCCGCUca -5'
24750 3' -62.6 NC_005264.1 + 95206 0.77 0.160581
Target:  5'- gGCCGCGCAGGacaccccugcGCCCGCgUGGCGAa- -3'
miRNA:   3'- gCGGCGUGUCC----------UGGGCGaGCCGCUca -5'
24750 3' -62.6 NC_005264.1 + 109887 0.75 0.203901
Target:  5'- cCGCCGCGUAGaGGCgCUGCaUCGGCGAGUc -3'
miRNA:   3'- -GCGGCGUGUC-CUG-GGCG-AGCCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 31139 0.74 0.245542
Target:  5'- aCGCCGCGCAGGcCCaCGCUaCGcuuGCGAGc -3'
miRNA:   3'- -GCGGCGUGUCCuGG-GCGA-GC---CGCUCa -5'
24750 3' -62.6 NC_005264.1 + 49592 0.73 0.285641
Target:  5'- aCGCCGC-CGGcGACCaggacgacggggggCGCUCGGUGGGg -3'
miRNA:   3'- -GCGGCGuGUC-CUGG--------------GCGAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 41919 0.73 0.293997
Target:  5'- aCGaCCGCGCAGaaAgCCGCUCGGCGuAGUu -3'
miRNA:   3'- -GC-GGCGUGUCc-UgGGCGAGCCGC-UCA- -5'
24750 3' -62.6 NC_005264.1 + 122101 0.73 0.293997
Target:  5'- uCGCCGCgACuggcggcggccgAGGACCCGUUCgGGCGAu- -3'
miRNA:   3'- -GCGGCG-UG------------UCCUGGGCGAG-CCGCUca -5'
24750 3' -62.6 NC_005264.1 + 18415 0.72 0.335018
Target:  5'- gGCCgGCGCAGGcgcGCCCucucGCUCGGCGcGGg -3'
miRNA:   3'- gCGG-CGUGUCC---UGGG----CGAGCCGC-UCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.