miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24750 3' -62.6 NC_005264.1 + 48097 0.66 0.662226
Target:  5'- gGCCGCGCGGGuuCUGCacgCGcGCGGc- -3'
miRNA:   3'- gCGGCGUGUCCugGGCGa--GC-CGCUca -5'
24750 3' -62.6 NC_005264.1 + 103388 0.69 0.489585
Target:  5'- uGCCGCGCGGGGCC-GCUuugacaaaucguaCGGUGcGUg -3'
miRNA:   3'- gCGGCGUGUCCUGGgCGA-------------GCCGCuCA- -5'
24750 3' -62.6 NC_005264.1 + 95330 0.7 0.404066
Target:  5'- uGCCGcCGCcGGGCgCCGCgaaacggacUCGGCGGGg -3'
miRNA:   3'- gCGGC-GUGuCCUG-GGCG---------AGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 33295 1.07 0.00115
Target:  5'- gCGCCGCACAGGACCCGCUCGGCGAGUa -3'
miRNA:   3'- -GCGGCGUGUCCUGGGCGAGCCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 122624 0.66 0.623349
Target:  5'- gCGUCGUggaauacauGCAGG-CCCGCUCGGUc--- -3'
miRNA:   3'- -GCGGCG---------UGUCCuGGGCGAGCCGcuca -5'
24750 3' -62.6 NC_005264.1 + 53074 0.66 0.622376
Target:  5'- gGCCGCggacccaGCGGGagugucuaaGCUgguggacaaggCGCUCGGCGAGg -3'
miRNA:   3'- gCGGCG-------UGUCC---------UGG-----------GCGAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 56819 0.67 0.603918
Target:  5'- gCGCUGCGCGGcGGCCCuaGCUagCGGCucGUg -3'
miRNA:   3'- -GCGGCGUGUC-CUGGG--CGA--GCCGcuCA- -5'
24750 3' -62.6 NC_005264.1 + 51777 0.67 0.603918
Target:  5'- aGCuCGCGCGGcGGCacuuCGUcCGGCGAGUc -3'
miRNA:   3'- gCG-GCGUGUC-CUGg---GCGaGCCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 26157 0.67 0.564376
Target:  5'- gGCCGCgGCgAGGACUuuCGCggcacugUCGGCGGGg -3'
miRNA:   3'- gCGGCG-UG-UCCUGG--GCG-------AGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 41899 0.68 0.499617
Target:  5'- uGCCGgaggAUGGGAUCCGCagucgCGGCGGGg -3'
miRNA:   3'- gCGGCg---UGUCCUGGGCGa----GCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 24361 0.68 0.540591
Target:  5'- cCGCCGCucugGCAuGACCgGCUucgcggcucccccggCGGCGAGg -3'
miRNA:   3'- -GCGGCG----UGUcCUGGgCGA---------------GCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 33852 0.67 0.57493
Target:  5'- uCGCCGCACGGGuCCggcagucccuCGC-CGGCGu-- -3'
miRNA:   3'- -GCGGCGUGUCCuGG----------GCGaGCCGCuca -5'
24750 3' -62.6 NC_005264.1 + 27749 0.66 0.642803
Target:  5'- cCGCCGgGaGGGugCCGaucacucuguaCUUGGCGAGa -3'
miRNA:   3'- -GCGGCgUgUCCugGGC-----------GAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 153453 0.68 0.536816
Target:  5'- gCGCUGCACgAGGACCucauaaucgCGCUCGGgaCGAu- -3'
miRNA:   3'- -GCGGCGUG-UCCUGG---------GCGAGCC--GCUca -5'
24750 3' -62.6 NC_005264.1 + 38364 0.66 0.642803
Target:  5'- gGgCGguUAGGACCUcCUcCGGCGAGa -3'
miRNA:   3'- gCgGCguGUCCUGGGcGA-GCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 99920 0.67 0.594229
Target:  5'- gGCCGCGCAa-GCCCGCgCGGCu--- -3'
miRNA:   3'- gCGGCGUGUccUGGGCGaGCCGcuca -5'
24750 3' -62.6 NC_005264.1 + 16483 0.68 0.527419
Target:  5'- aGCCGCGguGG-CCUGCggGGuCGAGg -3'
miRNA:   3'- gCGGCGUguCCuGGGCGagCC-GCUCa -5'
24750 3' -62.6 NC_005264.1 + 23644 0.69 0.472483
Target:  5'- aGCCauaGUACAGGACCgGCaUGGCG-GUa -3'
miRNA:   3'- gCGG---CGUGUCCUGGgCGaGCCGCuCA- -5'
24750 3' -62.6 NC_005264.1 + 129007 0.66 0.632103
Target:  5'- gCGgCGCGCAGGGgaauagcuacagcCuuGC-CGGCGAGc -3'
miRNA:   3'- -GCgGCGUGUCCU-------------GggCGaGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 5279 0.66 0.612656
Target:  5'- gGCCGgACGGcggggcggcggcuGACCCGUggGGCGGGc -3'
miRNA:   3'- gCGGCgUGUC-------------CUGGGCGagCCGCUCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.