miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24750 3' -62.6 NC_005264.1 + 1577 0.69 0.463604
Target:  5'- gGCUGCA-GGGACCU-CUCGGUGGGg -3'
miRNA:   3'- gCGGCGUgUCCUGGGcGAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 3074 0.73 0.293997
Target:  5'- uCGCCGCgACuggcggcggccgAGGACCCGUUCgGGCGAu- -3'
miRNA:   3'- -GCGGCG-UG------------UCCUGGGCGAG-CCGCUca -5'
24750 3' -62.6 NC_005264.1 + 3610 0.7 0.395961
Target:  5'- cCGCCGCGgGGGG-CCGCgagGGCGGGc -3'
miRNA:   3'- -GCGGCGUgUCCUgGGCGag-CCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 4261 0.69 0.463604
Target:  5'- cCGCCGCGCAGcGAgUCUGUUCGGCc--- -3'
miRNA:   3'- -GCGGCGUGUC-CU-GGGCGAGCCGcuca -5'
24750 3' -62.6 NC_005264.1 + 4266 0.77 0.156738
Target:  5'- uGCCGCGCGGGAaCCGCggggCGGCGGc- -3'
miRNA:   3'- gCGGCGUGUCCUgGGCGa---GCCGCUca -5'
24750 3' -62.6 NC_005264.1 + 5279 0.66 0.612656
Target:  5'- gGCCGgACGGcggggcggcggcuGACCCGUggGGCGGGc -3'
miRNA:   3'- gCGGCgUGUC-------------CUGGGCGagCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 10159 0.66 0.652522
Target:  5'- -aCCGCGucCAGGGCC---UCGGCGAGUa -3'
miRNA:   3'- gcGGCGU--GUCCUGGgcgAGCCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 11989 0.67 0.559595
Target:  5'- gCGCgGCACGGcagaguacgcgucacGACCUGCggCGGCGAc- -3'
miRNA:   3'- -GCGgCGUGUC---------------CUGGGCGa-GCCGCUca -5'
24750 3' -62.6 NC_005264.1 + 16426 0.7 0.404066
Target:  5'- gGCCGCucgacugccGCGGGGCCUGC-CcGCGGGUg -3'
miRNA:   3'- gCGGCG---------UGUCCUGGGCGaGcCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 16483 0.68 0.527419
Target:  5'- aGCCGCGguGG-CCUGCggGGuCGAGg -3'
miRNA:   3'- gCGGCGUguCCuGGGCGagCC-GCUCa -5'
24750 3' -62.6 NC_005264.1 + 16861 0.66 0.623349
Target:  5'- cCGCCGCGCAGuucguAUUCGCgcCGGCGAa- -3'
miRNA:   3'- -GCGGCGUGUCc----UGGGCGa-GCCGCUca -5'
24750 3' -62.6 NC_005264.1 + 18415 0.72 0.335018
Target:  5'- gGCCgGCGCAGGcgcGCCCucucGCUCGGCGcGGg -3'
miRNA:   3'- gCGG-CGUGUCC---UGGG----CGAGCCGC-UCa -5'
24750 3' -62.6 NC_005264.1 + 23644 0.69 0.472483
Target:  5'- aGCCauaGUACAGGACCgGCaUGGCG-GUa -3'
miRNA:   3'- gCGG---CGUGUCCUGGgCGaGCCGCuCA- -5'
24750 3' -62.6 NC_005264.1 + 24361 0.68 0.540591
Target:  5'- cCGCCGCucugGCAuGACCgGCUucgcggcucccccggCGGCGAGg -3'
miRNA:   3'- -GCGGCG----UGUcCUGGgCGA---------------GCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 26157 0.67 0.564376
Target:  5'- gGCCGCgGCgAGGACUuuCGCggcacugUCGGCGGGg -3'
miRNA:   3'- gCGGCG-UG-UCCUGG--GCG-------AGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 27749 0.66 0.642803
Target:  5'- cCGCCGgGaGGGugCCGaucacucuguaCUUGGCGAGa -3'
miRNA:   3'- -GCGGCgUgUCCugGGC-----------GAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 31139 0.74 0.245542
Target:  5'- aCGCCGCGCAGGcCCaCGCUaCGcuuGCGAGc -3'
miRNA:   3'- -GCGGCGUGUCCuGG-GCGA-GC---CGCUCa -5'
24750 3' -62.6 NC_005264.1 + 33295 1.07 0.00115
Target:  5'- gCGCCGCACAGGACCCGCUCGGCGAGUa -3'
miRNA:   3'- -GCGGCGUGUCCUGGGCGAGCCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 33795 0.68 0.527419
Target:  5'- aGCCGCGCAcgccgcuuuGGACCgGCUCGcCGGc- -3'
miRNA:   3'- gCGGCGUGU---------CCUGGgCGAGCcGCUca -5'
24750 3' -62.6 NC_005264.1 + 33852 0.67 0.57493
Target:  5'- uCGCCGCACGGGuCCggcagucccuCGC-CGGCGu-- -3'
miRNA:   3'- -GCGGCGUGUCCuGG----------GCGaGCCGCuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.