miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24750 3' -62.6 NC_005264.1 + 34478 0.68 0.518084
Target:  5'- gCGCgCGCuuCAGGAggaCGUUCGGCGGGa -3'
miRNA:   3'- -GCG-GCGu-GUCCUgg-GCGAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 38364 0.66 0.642803
Target:  5'- gGgCGguUAGGACCUcCUcCGGCGAGa -3'
miRNA:   3'- gCgGCguGUCCUGGGcGA-GCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 38413 0.69 0.463604
Target:  5'- gGCCGCGgAGcACgCGCUCuGCGAGUu -3'
miRNA:   3'- gCGGCGUgUCcUGgGCGAGcCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 41899 0.68 0.499617
Target:  5'- uGCCGgaggAUGGGAUCCGCagucgCGGCGGGg -3'
miRNA:   3'- gCGGCg---UGUCCUGGGCGa----GCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 41919 0.73 0.293997
Target:  5'- aCGaCCGCGCAGaaAgCCGCUCGGCGuAGUu -3'
miRNA:   3'- -GC-GGCGUGUCc-UgGGCGAGCCGC-UCA- -5'
24750 3' -62.6 NC_005264.1 + 45768 0.66 0.613627
Target:  5'- -cCUGCGCGGGGCgCGCggagUGGgGAGUc -3'
miRNA:   3'- gcGGCGUGUCCUGgGCGa---GCCgCUCA- -5'
24750 3' -62.6 NC_005264.1 + 48097 0.66 0.662226
Target:  5'- gGCCGCGCGGGuuCUGCacgCGcGCGGc- -3'
miRNA:   3'- gCGGCGUGUCCugGGCGa--GC-CGCUca -5'
24750 3' -62.6 NC_005264.1 + 48150 0.69 0.490493
Target:  5'- aGaCCGCGCAau-CCUGCUCGGCGuGg -3'
miRNA:   3'- gC-GGCGUGUccuGGGCGAGCCGCuCa -5'
24750 3' -62.6 NC_005264.1 + 49592 0.73 0.285641
Target:  5'- aCGCCGC-CGGcGACCaggacgacggggggCGCUCGGUGGGg -3'
miRNA:   3'- -GCGGCGuGUC-CUGG--------------GCGAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 51777 0.67 0.603918
Target:  5'- aGCuCGCGCGGcGGCacuuCGUcCGGCGAGUc -3'
miRNA:   3'- gCG-GCGUGUC-CUGg---GCGaGCCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 53074 0.66 0.622376
Target:  5'- gGCCGCggacccaGCGGGagugucuaaGCUgguggacaaggCGCUCGGCGAGg -3'
miRNA:   3'- gCGGCG-------UGUCC---------UGG-----------GCGAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 54667 0.68 0.546271
Target:  5'- gCGCCGaCugGGGACaucauuaCGCUCcccGCGAGg -3'
miRNA:   3'- -GCGGC-GugUCCUGg------GCGAGc--CGCUCa -5'
24750 3' -62.6 NC_005264.1 + 56819 0.67 0.603918
Target:  5'- gCGCUGCGCGGcGGCCCuaGCUagCGGCucGUg -3'
miRNA:   3'- -GCGGCGUGUC-CUGGG--CGA--GCCGcuCA- -5'
24750 3' -62.6 NC_005264.1 + 58029 0.69 0.463604
Target:  5'- cCGUCGUGCGGcGCCCGCUCGucucGCGAa- -3'
miRNA:   3'- -GCGGCGUGUCcUGGGCGAGC----CGCUca -5'
24750 3' -62.6 NC_005264.1 + 62922 0.67 0.603918
Target:  5'- aGCCGCGCGGG-CuuGCgCGGCc--- -3'
miRNA:   3'- gCGGCGUGUCCuGggCGaGCCGcuca -5'
24750 3' -62.6 NC_005264.1 + 63057 0.66 0.613627
Target:  5'- gGCCGCcuugaucuCGGucUCCaGCUCGGCGAGg -3'
miRNA:   3'- gCGGCGu-------GUCcuGGG-CGAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 66166 0.66 0.649607
Target:  5'- uCGCUagaagaugugaugaGCGCAccGCCCGCaUCGGCGGGc -3'
miRNA:   3'- -GCGG--------------CGUGUccUGGGCG-AGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 69598 0.67 0.584564
Target:  5'- gCGCCG-ACgAGGGCgCCGCcCGGCGuGa -3'
miRNA:   3'- -GCGGCgUG-UCCUG-GGCGaGCCGCuCa -5'
24750 3' -62.6 NC_005264.1 + 70673 0.69 0.454814
Target:  5'- gCGCCGCcgGCAGGcaauuuuuacGCCCGCg-GGCGAc- -3'
miRNA:   3'- -GCGGCG--UGUCC----------UGGGCGagCCGCUca -5'
24750 3' -62.6 NC_005264.1 + 75192 0.67 0.584564
Target:  5'- uGCCGC-CAGGuCCCGCgccccacgCGGCu--- -3'
miRNA:   3'- gCGGCGuGUCCuGGGCGa-------GCCGcuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.