Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24750 | 3' | -62.6 | NC_005264.1 | + | 38413 | 0.69 | 0.463604 |
Target: 5'- gGCCGCGgAGcACgCGCUCuGCGAGUu -3' miRNA: 3'- gCGGCGUgUCcUGgGCGAGcCGCUCA- -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 4261 | 0.69 | 0.463604 |
Target: 5'- cCGCCGCGCAGcGAgUCUGUUCGGCc--- -3' miRNA: 3'- -GCGGCGUGUC-CU-GGGCGAGCCGcuca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 99748 | 0.69 | 0.463604 |
Target: 5'- --aCGCAUguuGGACUCGCcCGGCGAGg -3' miRNA: 3'- gcgGCGUGu--CCUGGGCGaGCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 58029 | 0.69 | 0.463604 |
Target: 5'- cCGUCGUGCGGcGCCCGCUCGucucGCGAa- -3' miRNA: 3'- -GCGGCGUGUCcUGGGCGAGC----CGCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 1577 | 0.69 | 0.463604 |
Target: 5'- gGCUGCA-GGGACCU-CUCGGUGGGg -3' miRNA: 3'- gCGGCGUgUCCUGGGcGAGCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 23644 | 0.69 | 0.472483 |
Target: 5'- aGCCauaGUACAGGACCgGCaUGGCG-GUa -3' miRNA: 3'- gCGG---CGUGUCCUGGgCGaGCCGCuCA- -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 160908 | 0.69 | 0.476059 |
Target: 5'- gGCCGCGCacagacucuugccggAGGAugggauCCCGCagucgCGGCGGGg -3' miRNA: 3'- gCGGCGUG---------------UCCU------GGGCGa----GCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 103388 | 0.69 | 0.489585 |
Target: 5'- uGCCGCGCGGGGCC-GCUuugacaaaucguaCGGUGcGUg -3' miRNA: 3'- gCGGCGUGUCCUGGgCGA-------------GCCGCuCA- -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 48150 | 0.69 | 0.490493 |
Target: 5'- aGaCCGCGCAau-CCUGCUCGGCGuGg -3' miRNA: 3'- gC-GGCGUGUccuGGGCGAGCCGCuCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 41899 | 0.68 | 0.499617 |
Target: 5'- uGCCGgaggAUGGGAUCCGCagucgCGGCGGGg -3' miRNA: 3'- gCGGCg---UGUCCUGGGCGa----GCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 113881 | 0.68 | 0.518084 |
Target: 5'- gCGCCuacugcuuggaGCGCAGcGGCCCGCacaagugcccaUCGGgCGAGa -3' miRNA: 3'- -GCGG-----------CGUGUC-CUGGGCG-----------AGCC-GCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 93850 | 0.68 | 0.518084 |
Target: 5'- gGCCGCGgGccacuGGCCCGCUaagcUGGCGAGc -3' miRNA: 3'- gCGGCGUgUc----CUGGGCGA----GCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 34478 | 0.68 | 0.518084 |
Target: 5'- gCGCgCGCuuCAGGAggaCGUUCGGCGGGa -3' miRNA: 3'- -GCG-GCGu-GUCCUgg-GCGAGCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 33795 | 0.68 | 0.527419 |
Target: 5'- aGCCGCGCAcgccgcuuuGGACCgGCUCGcCGGc- -3' miRNA: 3'- gCGGCGUGU---------CCUGGgCGAGCcGCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 16483 | 0.68 | 0.527419 |
Target: 5'- aGCCGCGguGG-CCUGCggGGuCGAGg -3' miRNA: 3'- gCGGCGUguCCuGGGCGagCC-GCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 153453 | 0.68 | 0.536816 |
Target: 5'- gCGCUGCACgAGGACCucauaaucgCGCUCGGgaCGAu- -3' miRNA: 3'- -GCGGCGUG-UCCUGG---------GCGAGCC--GCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 84898 | 0.68 | 0.536816 |
Target: 5'- gGCCGCGCAGGACggGag-GGCGGGa -3' miRNA: 3'- gCGGCGUGUCCUGggCgagCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 24361 | 0.68 | 0.540591 |
Target: 5'- cCGCCGCucugGCAuGACCgGCUucgcggcucccccggCGGCGAGg -3' miRNA: 3'- -GCGGCG----UGUcCUGGgCGA---------------GCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 54667 | 0.68 | 0.546271 |
Target: 5'- gCGCCGaCugGGGACaucauuaCGCUCcccGCGAGg -3' miRNA: 3'- -GCGGC-GugUCCUGg------GCGAGc--CGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 11989 | 0.67 | 0.559595 |
Target: 5'- gCGCgGCACGGcagaguacgcgucacGACCUGCggCGGCGAc- -3' miRNA: 3'- -GCGgCGUGUC---------------CUGGGCGa-GCCGCUca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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