Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24750 | 3' | -62.6 | NC_005264.1 | + | 69598 | 0.67 | 0.584564 |
Target: 5'- gCGCCG-ACgAGGGCgCCGCcCGGCGuGa -3' miRNA: 3'- -GCGGCgUG-UCCUG-GGCGaGCCGCuCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 62922 | 0.67 | 0.603918 |
Target: 5'- aGCCGCGCGGG-CuuGCgCGGCc--- -3' miRNA: 3'- gCGGCGUGUCCuGggCGaGCCGcuca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 131016 | 0.67 | 0.559595 |
Target: 5'- gCGCgGCACGGcagaguacgcgucacGACCUGCggCGGCGAc- -3' miRNA: 3'- -GCGgCGUGUC---------------CUGGGCGa-GCCGCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 136478 | 0.67 | 0.565333 |
Target: 5'- gCGCCGCGCA--GCCUGCcgCGGCGc-- -3' miRNA: 3'- -GCGGCGUGUccUGGGCGa-GCCGCuca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 152878 | 0.67 | 0.57493 |
Target: 5'- uCGCCGCACGGGuCCggcagucccuCGC-CGGCGu-- -3' miRNA: 3'- -GCGGCGUGUCCuGG----------GCGaGCCGCuca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 99920 | 0.67 | 0.594229 |
Target: 5'- gGCCGCGCAa-GCCCGCgCGGCu--- -3' miRNA: 3'- gCGGCGUGUccUGGGCGaGCCGcuca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 56819 | 0.67 | 0.603918 |
Target: 5'- gCGCUGCGCGGcGGCCCuaGCUagCGGCucGUg -3' miRNA: 3'- -GCGGCGUGUC-CUGGG--CGA--GCCGcuCA- -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 51777 | 0.67 | 0.603918 |
Target: 5'- aGCuCGCGCGGcGGCacuuCGUcCGGCGAGUc -3' miRNA: 3'- gCG-GCGUGUC-CUGg---GCGaGCCGCUCA- -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 11989 | 0.67 | 0.559595 |
Target: 5'- gCGCgGCACGGcagaguacgcgucacGACCUGCggCGGCGAc- -3' miRNA: 3'- -GCGgCGUGUC---------------CUGGGCGa-GCCGCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 26157 | 0.67 | 0.564376 |
Target: 5'- gGCCGCgGCgAGGACUuuCGCggcacugUCGGCGGGg -3' miRNA: 3'- gCGGCG-UG-UCCUGG--GCG-------AGCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 33852 | 0.67 | 0.57493 |
Target: 5'- uCGCCGCACGGGuCCggcagucccuCGC-CGGCGu-- -3' miRNA: 3'- -GCGGCGUGUCCuGG----------GCGaGCCGCuca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 24361 | 0.68 | 0.540591 |
Target: 5'- cCGCCGCucugGCAuGACCgGCUucgcggcucccccggCGGCGAGg -3' miRNA: 3'- -GCGGCG----UGUcCUGGgCGA---------------GCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 153453 | 0.68 | 0.536816 |
Target: 5'- gCGCUGCACgAGGACCucauaaucgCGCUCGGgaCGAu- -3' miRNA: 3'- -GCGGCGUG-UCCUGG---------GCGAGCC--GCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 16483 | 0.68 | 0.527419 |
Target: 5'- aGCCGCGguGG-CCUGCggGGuCGAGg -3' miRNA: 3'- gCGGCGUguCCuGGGCGagCC-GCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 34478 | 0.68 | 0.518084 |
Target: 5'- gCGCgCGCuuCAGGAggaCGUUCGGCGGGa -3' miRNA: 3'- -GCG-GCGu-GUCCUgg-GCGAGCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 113881 | 0.68 | 0.518084 |
Target: 5'- gCGCCuacugcuuggaGCGCAGcGGCCCGCacaagugcccaUCGGgCGAGa -3' miRNA: 3'- -GCGG-----------CGUGUC-CUGGGCG-----------AGCC-GCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 93850 | 0.68 | 0.518084 |
Target: 5'- gGCCGCGgGccacuGGCCCGCUaagcUGGCGAGc -3' miRNA: 3'- gCGGCGUgUc----CUGGGCGA----GCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 33795 | 0.68 | 0.527419 |
Target: 5'- aGCCGCGCAcgccgcuuuGGACCgGCUCGcCGGc- -3' miRNA: 3'- gCGGCGUGU---------CCUGGgCGAGCcGCUca -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 84898 | 0.68 | 0.536816 |
Target: 5'- gGCCGCGCAGGACggGag-GGCGGGa -3' miRNA: 3'- gCGGCGUGUCCUGggCgagCCGCUCa -5' |
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24750 | 3' | -62.6 | NC_005264.1 | + | 54667 | 0.68 | 0.546271 |
Target: 5'- gCGCCGaCugGGGACaucauuaCGCUCcccGCGAGg -3' miRNA: 3'- -GCGGC-GugUCCUGg------GCGAGc--CGCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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