miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24750 3' -62.6 NC_005264.1 + 69598 0.67 0.584564
Target:  5'- gCGCCG-ACgAGGGCgCCGCcCGGCGuGa -3'
miRNA:   3'- -GCGGCgUG-UCCUG-GGCGaGCCGCuCa -5'
24750 3' -62.6 NC_005264.1 + 75192 0.67 0.584564
Target:  5'- uGCCGC-CAGGuCCCGCgccccacgCGGCu--- -3'
miRNA:   3'- gCGGCGuGUCCuGGGCGa-------GCCGcuca -5'
24750 3' -62.6 NC_005264.1 + 76142 0.67 0.57493
Target:  5'- gGCgGCAaa-GACCgCGCgCGGCGAGUa -3'
miRNA:   3'- gCGgCGUgucCUGG-GCGaGCCGCUCA- -5'
24750 3' -62.6 NC_005264.1 + 108617 0.67 0.57493
Target:  5'- gGCCGCcucgacACAGGcCUCuaUUGGCGAGg -3'
miRNA:   3'- gCGGCG------UGUCCuGGGcgAGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 152878 0.67 0.57493
Target:  5'- uCGCCGCACGGGuCCggcagucccuCGC-CGGCGu-- -3'
miRNA:   3'- -GCGGCGUGUCCuGG----------GCGaGCCGCuca -5'
24750 3' -62.6 NC_005264.1 + 33852 0.67 0.57493
Target:  5'- uCGCCGCACGGGuCCggcagucccuCGC-CGGCGu-- -3'
miRNA:   3'- -GCGGCGUGUCCuGG----------GCGaGCCGCuca -5'
24750 3' -62.6 NC_005264.1 + 76346 0.67 0.565333
Target:  5'- gGCCGCGCGGcGACUgCGCgcaGGCGcGUu -3'
miRNA:   3'- gCGGCGUGUC-CUGG-GCGag-CCGCuCA- -5'
24750 3' -62.6 NC_005264.1 + 136478 0.67 0.565333
Target:  5'- gCGCCGCGCA--GCCUGCcgCGGCGc-- -3'
miRNA:   3'- -GCGGCGUGUccUGGGCGa-GCCGCuca -5'
24750 3' -62.6 NC_005264.1 + 26157 0.67 0.564376
Target:  5'- gGCCGCgGCgAGGACUuuCGCggcacugUCGGCGGGg -3'
miRNA:   3'- gCGGCG-UG-UCCUGG--GCG-------AGCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 11989 0.67 0.559595
Target:  5'- gCGCgGCACGGcagaguacgcgucacGACCUGCggCGGCGAc- -3'
miRNA:   3'- -GCGgCGUGUC---------------CUGGGCGa-GCCGCUca -5'
24750 3' -62.6 NC_005264.1 + 131016 0.67 0.559595
Target:  5'- gCGCgGCACGGcagaguacgcgucacGACCUGCggCGGCGAc- -3'
miRNA:   3'- -GCGgCGUGUC---------------CUGGGCGa-GCCGCUca -5'
24750 3' -62.6 NC_005264.1 + 54667 0.68 0.546271
Target:  5'- gCGCCGaCugGGGACaucauuaCGCUCcccGCGAGg -3'
miRNA:   3'- -GCGGC-GugUCCUGg------GCGAGc--CGCUCa -5'
24750 3' -62.6 NC_005264.1 + 24361 0.68 0.540591
Target:  5'- cCGCCGCucugGCAuGACCgGCUucgcggcucccccggCGGCGAGg -3'
miRNA:   3'- -GCGGCG----UGUcCUGGgCGA---------------GCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 84898 0.68 0.536816
Target:  5'- gGCCGCGCAGGACggGag-GGCGGGa -3'
miRNA:   3'- gCGGCGUGUCCUGggCgagCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 153453 0.68 0.536816
Target:  5'- gCGCUGCACgAGGACCucauaaucgCGCUCGGgaCGAu- -3'
miRNA:   3'- -GCGGCGUG-UCCUGG---------GCGAGCC--GCUca -5'
24750 3' -62.6 NC_005264.1 + 33795 0.68 0.527419
Target:  5'- aGCCGCGCAcgccgcuuuGGACCgGCUCGcCGGc- -3'
miRNA:   3'- gCGGCGUGU---------CCUGGgCGAGCcGCUca -5'
24750 3' -62.6 NC_005264.1 + 16483 0.68 0.527419
Target:  5'- aGCCGCGguGG-CCUGCggGGuCGAGg -3'
miRNA:   3'- gCGGCGUguCCuGGGCGagCC-GCUCa -5'
24750 3' -62.6 NC_005264.1 + 93850 0.68 0.518084
Target:  5'- gGCCGCGgGccacuGGCCCGCUaagcUGGCGAGc -3'
miRNA:   3'- gCGGCGUgUc----CUGGGCGA----GCCGCUCa -5'
24750 3' -62.6 NC_005264.1 + 113881 0.68 0.518084
Target:  5'- gCGCCuacugcuuggaGCGCAGcGGCCCGCacaagugcccaUCGGgCGAGa -3'
miRNA:   3'- -GCGG-----------CGUGUC-CUGGGCG-----------AGCC-GCUCa -5'
24750 3' -62.6 NC_005264.1 + 34478 0.68 0.518084
Target:  5'- gCGCgCGCuuCAGGAggaCGUUCGGCGGGa -3'
miRNA:   3'- -GCG-GCGu-GUCCUgg-GCGAGCCGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.