miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24751 5' -60.2 NC_005264.1 + 154027 1.08 0.001345
Target:  5'- cGUGCCGCGAGCGGCGCUCGAAGAGGAg -3'
miRNA:   3'- -CACGGCGCUCGCCGCGAGCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 35000 1.08 0.001345
Target:  5'- cGUGCCGCGAGCGGCGCUCGAAGAGGAg -3'
miRNA:   3'- -CACGGCGCUCGCCGCGAGCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 39216 0.77 0.203781
Target:  5'- -cGCCGCc-GCGGCGCUggCGggGAGGGc -3'
miRNA:   3'- caCGGCGcuCGCCGCGA--GCuuCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 158243 0.77 0.203781
Target:  5'- -cGCCGCc-GCGGCGCUggCGggGAGGGc -3'
miRNA:   3'- caCGGCGcuCGCCGCGA--GCuuCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 2873 0.77 0.213789
Target:  5'- -gGCUGCGAucgaccggggcGCGGCGCggCGggGAGGGc -3'
miRNA:   3'- caCGGCGCU-----------CGCCGCGa-GCuuCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 121899 0.77 0.213789
Target:  5'- -gGCUGCGAucgaccggggcGCGGCGCggCGggGAGGGc -3'
miRNA:   3'- caCGGCGCU-----------CGCCGCGa-GCuuCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 36819 0.76 0.218949
Target:  5'- -cGCCGCGGGCcaCGC-CGAGGAGGAg -3'
miRNA:   3'- caCGGCGCUCGccGCGaGCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 155845 0.76 0.218949
Target:  5'- -cGCCGCGGGCcaCGC-CGAGGAGGAg -3'
miRNA:   3'- caCGGCGCUCGccGCGaGCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 25362 0.73 0.338233
Target:  5'- ---aCGCGAGCGuGUGgUCGAGGAGGGc -3'
miRNA:   3'- cacgGCGCUCGC-CGCgAGCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 120109 0.73 0.345671
Target:  5'- gGUGCCGCGcagaAGUGGgGCgcagCGAgcaGGAGGAc -3'
miRNA:   3'- -CACGGCGC----UCGCCgCGa---GCU---UCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 97446 0.73 0.366334
Target:  5'- -cGCCGCGgaucugauagacguAGCGcCGCUgGAAGAGGAc -3'
miRNA:   3'- caCGGCGC--------------UCGCcGCGAgCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 3679 0.72 0.384596
Target:  5'- -gGCCGUcucGGCGGCGagaCGAGGAGGAc -3'
miRNA:   3'- caCGGCGc--UCGCCGCga-GCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 122706 0.72 0.384596
Target:  5'- -gGCCGUcucGGCGGCGagaCGAGGAGGAc -3'
miRNA:   3'- caCGGCGc--UCGCCGCga-GCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 48377 0.72 0.400958
Target:  5'- aGUGCCGCGucgaGGCGCUCGAcguucgucGAGGc -3'
miRNA:   3'- -CACGGCGCucg-CCGCGAGCUu-------CUCCu -5'
24751 5' -60.2 NC_005264.1 + 132462 0.72 0.409304
Target:  5'- -cGCCGcCGAgacgcgacgcgGCGGCGC-CGAAGGGGc -3'
miRNA:   3'- caCGGC-GCU-----------CGCCGCGaGCUUCUCCu -5'
24751 5' -60.2 NC_005264.1 + 13435 0.72 0.409304
Target:  5'- -cGCCGcCGAgacgcgacgcgGCGGCGC-CGAAGGGGc -3'
miRNA:   3'- caCGGC-GCU-----------CGCCGCGaGCUUCUCCu -5'
24751 5' -60.2 NC_005264.1 + 115936 0.71 0.452602
Target:  5'- -aGCCGCGAacacGCGGCGCagGcuAGGAGGu -3'
miRNA:   3'- caCGGCGCU----CGCCGCGagC--UUCUCCu -5'
24751 5' -60.2 NC_005264.1 + 93449 0.71 0.461558
Target:  5'- uGUGgCGCaGGUGGuCGCcgCGGAGAGGAu -3'
miRNA:   3'- -CACgGCGcUCGCC-GCGa-GCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 86224 0.71 0.461558
Target:  5'- cGUGCuCGUGGGCGGCcgaGUUCGcaguuGAGGAc -3'
miRNA:   3'- -CACG-GCGCUCGCCG---CGAGCuu---CUCCU- -5'
24751 5' -60.2 NC_005264.1 + 4496 0.71 0.469699
Target:  5'- -gGUCGCGAGCggaggggggacugGGCGUccgCGGAGGGGGa -3'
miRNA:   3'- caCGGCGCUCG-------------CCGCGa--GCUUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.