miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24751 5' -60.2 NC_005264.1 + 49596 0.68 0.593901
Target:  5'- -cGCCGgcgaccaggacgaCGGGgGGCGCUCGguGGGGu -3'
miRNA:   3'- caCGGC-------------GCUCgCCGCGAGCuuCUCCu -5'
24751 5' -60.2 NC_005264.1 + 122851 0.7 0.479747
Target:  5'- -gGCC-CGGGCGGgGC-CGcAGGAGGAa -3'
miRNA:   3'- caCGGcGCUCGCCgCGaGC-UUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 119934 0.7 0.507664
Target:  5'- cGUGUCGCGGGCcGCuggggggaaGgUCGGAGAGGGc -3'
miRNA:   3'- -CACGGCGCUCGcCG---------CgAGCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 4991 0.7 0.523787
Target:  5'- aGUGCCGCGAagacagcgaagggaGCGGUuuGCgcaGAGGAGGc -3'
miRNA:   3'- -CACGGCGCU--------------CGCCG--CGag-CUUCUCCu -5'
24751 5' -60.2 NC_005264.1 + 75319 0.7 0.526653
Target:  5'- -gGCCGCGGGCGGCucaUCGAucgcGGAg -3'
miRNA:   3'- caCGGCGCUCGCCGcg-AGCUucu-CCU- -5'
24751 5' -60.2 NC_005264.1 + 29893 0.69 0.554639
Target:  5'- uUGCCGCGAaggcguGCGGCGCuaccccgUCGGcgcuagGGAGGu -3'
miRNA:   3'- cACGGCGCU------CGCCGCG-------AGCU------UCUCCu -5'
24751 5' -60.2 NC_005264.1 + 152834 0.69 0.555612
Target:  5'- -cGgCGCGGGCuacGGgGCUCGucGAGGGc -3'
miRNA:   3'- caCgGCGCUCG---CCgCGAGCuuCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 118592 0.69 0.555612
Target:  5'- -cGCCGaacagcacuUGGGCGacuucgccGCGCUUGAAGGGGAa -3'
miRNA:   3'- caCGGC---------GCUCGC--------CGCGAGCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 20258 0.69 0.565371
Target:  5'- -gGuuGCGGcGCGGC-CUCGcGGAGGGg -3'
miRNA:   3'- caCggCGCU-CGCCGcGAGCuUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 58027 0.7 0.479747
Target:  5'- -gGCCGuCGuGCGGCGCcCGcucgucucgcgaAAGAGGAg -3'
miRNA:   3'- caCGGC-GCuCGCCGCGaGC------------UUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 16562 0.7 0.479747
Target:  5'- -cGCgGUGGGCGGCGC-CGggGcGGc -3'
miRNA:   3'- caCGgCGCUCGCCGCGaGCuuCuCCu -5'
24751 5' -60.2 NC_005264.1 + 123523 0.71 0.469699
Target:  5'- -gGUCGCGAGCggaggggggacugGGCGUccgCGGAGGGGGa -3'
miRNA:   3'- caCGGCGCUCG-------------CCGCGa--GCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 158243 0.77 0.203781
Target:  5'- -cGCCGCc-GCGGCGCUggCGggGAGGGc -3'
miRNA:   3'- caCGGCGcuCGCCGCGA--GCuuCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 121899 0.77 0.213789
Target:  5'- -gGCUGCGAucgaccggggcGCGGCGCggCGggGAGGGc -3'
miRNA:   3'- caCGGCGCU-----------CGCCGCGa-GCuuCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 155845 0.76 0.218949
Target:  5'- -cGCCGCGGGCcaCGC-CGAGGAGGAg -3'
miRNA:   3'- caCGGCGCUCGccGCGaGCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 97446 0.73 0.366334
Target:  5'- -cGCCGCGgaucugauagacguAGCGcCGCUgGAAGAGGAc -3'
miRNA:   3'- caCGGCGC--------------UCGCcGCGAgCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 122706 0.72 0.384596
Target:  5'- -gGCCGUcucGGCGGCGagaCGAGGAGGAc -3'
miRNA:   3'- caCGGCGc--UCGCCGCga-GCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 48377 0.72 0.400958
Target:  5'- aGUGCCGCGucgaGGCGCUCGAcguucgucGAGGc -3'
miRNA:   3'- -CACGGCGCucg-CCGCGAGCUu-------CUCCu -5'
24751 5' -60.2 NC_005264.1 + 132462 0.72 0.409304
Target:  5'- -cGCCGcCGAgacgcgacgcgGCGGCGC-CGAAGGGGc -3'
miRNA:   3'- caCGGC-GCU-----------CGCCGCGaGCUUCUCCu -5'
24751 5' -60.2 NC_005264.1 + 115936 0.71 0.452602
Target:  5'- -aGCCGCGAacacGCGGCGCagGcuAGGAGGu -3'
miRNA:   3'- caCGGCGCU----CGCCGCGagC--UUCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.