Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24751 | 5' | -60.2 | NC_005264.1 | + | 908 | 0.7 | 0.507664 |
Target: 5'- cGUGUCGCGGGCcGCuggggggaaGgUCGGAGAGGGc -3' miRNA: 3'- -CACGGCGCUCGcCG---------CgAGCUUCUCCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 1393 | 0.66 | 0.751444 |
Target: 5'- --uCCGgGAGUGGCGaggacaGAGGGGGAa -3' miRNA: 3'- cacGGCgCUCGCCGCgag---CUUCUCCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 2873 | 0.77 | 0.213789 |
Target: 5'- -gGCUGCGAucgaccggggcGCGGCGCggCGggGAGGGc -3' miRNA: 3'- caCGGCGCU-----------CGCCGCGa-GCuuCUCCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 3075 | 0.67 | 0.67324 |
Target: 5'- -cGCCGCGAcugGCGGCGgC-CGAGGAcccguucGGGc -3' miRNA: 3'- caCGGCGCU---CGCCGC-GaGCUUCU-------CCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 3611 | 0.68 | 0.644509 |
Target: 5'- -cGCCGCGGGgGGC-CgCGAGGGcGGGc -3' miRNA: 3'- caCGGCGCUCgCCGcGaGCUUCU-CCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 3679 | 0.72 | 0.384596 |
Target: 5'- -gGCCGUcucGGCGGCGagaCGAGGAGGAc -3' miRNA: 3'- caCGGCGc--UCGCCGCga-GCUUCUCCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 3825 | 0.7 | 0.479747 |
Target: 5'- -gGCC-CGGGCGGgGC-CGcAGGAGGAa -3' miRNA: 3'- caCGGcGCUCGCCgCGaGC-UUCUCCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 4496 | 0.71 | 0.469699 |
Target: 5'- -gGUCGCGAGCggaggggggacugGGCGUccgCGGAGGGGGa -3' miRNA: 3'- caCGGCGCUCG-------------CCGCGa--GCUUCUCCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 4735 | 0.66 | 0.751444 |
Target: 5'- cUGcCCGcCGAGcCGGCGUcCGggGGuGGAc -3' miRNA: 3'- cAC-GGC-GCUC-GCCGCGaGCuuCU-CCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 4991 | 0.7 | 0.523787 |
Target: 5'- aGUGCCGCGAagacagcgaagggaGCGGUuuGCgcaGAGGAGGc -3' miRNA: 3'- -CACGGCGCU--------------CGCCG--CGag-CUUCUCCu -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 7937 | 0.66 | 0.732565 |
Target: 5'- cUGCCGCGAGaCGa-GC-CGGAGGGGc -3' miRNA: 3'- cACGGCGCUC-GCcgCGaGCUUCUCCu -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 13435 | 0.72 | 0.409304 |
Target: 5'- -cGCCGcCGAgacgcgacgcgGCGGCGC-CGAAGGGGc -3' miRNA: 3'- caCGGC-GCU-----------CGCCGCGaGCUUCUCCu -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 15381 | 0.69 | 0.575175 |
Target: 5'- gGUGCCGC-AGUGGCgauaGCUUGAGGuuGGGu -3' miRNA: 3'- -CACGGCGcUCGCCG----CGAGCUUCu-CCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 16562 | 0.7 | 0.479747 |
Target: 5'- -cGCgGUGGGCGGCGC-CGggGcGGc -3' miRNA: 3'- caCGgCGCUCGCCGCGaGCuuCuCCu -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 18041 | 0.66 | 0.751444 |
Target: 5'- cGUGCCGaCGcgaagcGGCGGCGCcgCGAGccAGGGc -3' miRNA: 3'- -CACGGC-GC------UCGCCGCGa-GCUUc-UCCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 20258 | 0.69 | 0.565371 |
Target: 5'- -gGuuGCGGcGCGGC-CUCGcGGAGGGg -3' miRNA: 3'- caCggCGCU-CGCCGcGAGCuUCUCCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 20456 | 0.67 | 0.693889 |
Target: 5'- -aGCCgGCGgacAGCGGCGCgcauGGGAGGGc -3' miRNA: 3'- caCGG-CGC---UCGCCGCGagc-UUCUCCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 25362 | 0.73 | 0.338233 |
Target: 5'- ---aCGCGAGCGuGUGgUCGAGGAGGGc -3' miRNA: 3'- cacgGCGCUCGC-CGCgAGCUUCUCCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 25597 | 0.66 | 0.731612 |
Target: 5'- -gGCCGCcggacgaGAGCGGCGagaCGAAGAuGAu -3' miRNA: 3'- caCGGCG-------CUCGCCGCga-GCUUCUcCU- -5' |
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24751 | 5' | -60.2 | NC_005264.1 | + | 25713 | 0.66 | 0.726834 |
Target: 5'- uUGgCGCGGGCGGCagcggugcguacucgGUcgCGGAGAGGc -3' miRNA: 3'- cACgGCGCUCGCCG---------------CGa-GCUUCUCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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