Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24752 | 3' | -57.6 | NC_005264.1 | + | 26642 | 0.67 | 0.808143 |
Target: 5'- ----aGAACCuuagcgcgGCGCCGGCGCCGc -3' miRNA: 3'- ucgacUUUGGucaa----CGCGGCCGCGGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 75707 | 0.67 | 0.808143 |
Target: 5'- cGGCgcgaAGACUGG-UGCGCCccgcgGGCGCCGg -3' miRNA: 3'- -UCGac--UUUGGUCaACGCGG-----CCGCGGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 135164 | 0.67 | 0.808143 |
Target: 5'- aGGCaGAGGCCAGccGCGuaccucgguCCGaGCGCCGc -3' miRNA: 3'- -UCGaCUUUGGUCaaCGC---------GGC-CGCGGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 161161 | 0.67 | 0.807264 |
Target: 5'- cGCUGAGACCgcacgagAGaacaaaagGCGCUGGCGUa- -3' miRNA: 3'- uCGACUUUGG-------UCaa------CGCGGCCGCGgu -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 42134 | 0.67 | 0.807264 |
Target: 5'- cGCUGAGACCgcacgagAGaacaaaagGCGCUGGCGUa- -3' miRNA: 3'- uCGACUUUGG-------UCaa------CGCGGCCGCGgu -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 43671 | 0.67 | 0.799278 |
Target: 5'- cGCUG-AACCGuucuuugGUGCCGGCGgCAu -3' miRNA: 3'- uCGACuUUGGUcaa----CGCGGCCGCgGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 81019 | 0.67 | 0.799278 |
Target: 5'- uGGUcGAAGCCAGcgGCGCCuaccCGCCGu -3' miRNA: 3'- -UCGaCUUUGGUCaaCGCGGcc--GCGGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 144645 | 0.67 | 0.798383 |
Target: 5'- cAGgUaAAACCGGUuagccggcauucuUGCGCCGaGCGUCAg -3' miRNA: 3'- -UCgAcUUUGGUCA-------------ACGCGGC-CGCGGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 101930 | 0.67 | 0.781107 |
Target: 5'- uGGCgcgcGAAACUGGcgGCGUCGGCcCCAc -3' miRNA: 3'- -UCGa---CUUUGGUCaaCGCGGCCGcGGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 2393 | 0.67 | 0.781107 |
Target: 5'- cGCaGGAGCCcg--GCGCCGGCcuGCCu -3' miRNA: 3'- uCGaCUUUGGucaaCGCGGCCG--CGGu -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 121420 | 0.67 | 0.781107 |
Target: 5'- cGCaGGAGCCcg--GCGCCGGCcuGCCu -3' miRNA: 3'- uCGaCUUUGGucaaCGCGGCCG--CGGu -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 141677 | 0.67 | 0.771817 |
Target: 5'- gAGCUGGGAUCGGgUGaCuaCGGCGaCCAu -3' miRNA: 3'- -UCGACUUUGGUCaAC-GcgGCCGC-GGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 75820 | 0.67 | 0.770881 |
Target: 5'- cGGCaGAAAcCCAGUagcuuucuaugcaUGCGCCacgaGGCGCUg -3' miRNA: 3'- -UCGaCUUU-GGUCA-------------ACGCGG----CCGCGGu -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 125702 | 0.68 | 0.752876 |
Target: 5'- uGgaGAGACCGccgGCGCCuGGUGCCc -3' miRNA: 3'- uCgaCUUUGGUcaaCGCGG-CCGCGGu -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 93381 | 0.68 | 0.752876 |
Target: 5'- gGGC-GAGACaCAGaUUGCagagGCCGGCGCg- -3' miRNA: 3'- -UCGaCUUUG-GUC-AACG----CGGCCGCGgu -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 88135 | 0.68 | 0.752876 |
Target: 5'- gGGCUGAuGGCCGGUUacuucaagacGuCGCCgguGGCGCUAa -3' miRNA: 3'- -UCGACU-UUGGUCAA----------C-GCGG---CCGCGGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 132763 | 0.68 | 0.743241 |
Target: 5'- -uCUGu--CCGGgcGCGgCGGCGCCGa -3' miRNA: 3'- ucGACuuuGGUCaaCGCgGCCGCGGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 19766 | 0.68 | 0.743241 |
Target: 5'- uGUUGAGccCCAGUaGCucuauGCCGGUGCCGc -3' miRNA: 3'- uCGACUUu-GGUCAaCG-----CGGCCGCGGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 40656 | 0.68 | 0.743241 |
Target: 5'- uGGCUGcgcGAGCCuuacuaCGCUGGCGCCGu -3' miRNA: 3'- -UCGAC---UUUGGucaac-GCGGCCGCGGU- -5' |
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24752 | 3' | -57.6 | NC_005264.1 | + | 33931 | 0.68 | 0.743241 |
Target: 5'- aGGCUGGgaaGGCCGuGgcGCGCCGggaccGCGCCc -3' miRNA: 3'- -UCGACU---UUGGU-CaaCGCGGC-----CGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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