miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 3' -57.6 NC_005264.1 + 43671 0.67 0.799278
Target:  5'- cGCUG-AACCGuucuuugGUGCCGGCGgCAu -3'
miRNA:   3'- uCGACuUUGGUcaa----CGCGGCCGCgGU- -5'
24752 3' -57.6 NC_005264.1 + 48629 0.66 0.833753
Target:  5'- cGCUucAAACC--UUGCGCgGGUGCCAu -3'
miRNA:   3'- uCGAc-UUUGGucAACGCGgCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 62043 0.66 0.849928
Target:  5'- aGGUUcGGAGCCuGcUGCGCCaGGCGUg- -3'
miRNA:   3'- -UCGA-CUUUGGuCaACGCGG-CCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 64328 0.66 0.825389
Target:  5'- aAGaCUGAGGCCccc--CGUCGGCGCCu -3'
miRNA:   3'- -UC-GACUUUGGucaacGCGGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 66601 0.7 0.602297
Target:  5'- cGCUGGGcugcGCCGcGU--UGCCGGCGCCGu -3'
miRNA:   3'- uCGACUU----UGGU-CAacGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 66720 0.69 0.663456
Target:  5'- cGCcggGGAGCaacaaGCGCCGGCGCCu -3'
miRNA:   3'- uCGa--CUUUGgucaaCGCGGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 68752 0.74 0.411059
Target:  5'- cGUUGGGgucGCCAGUcacgcgggacaUGuUGCCGGCGCCAa -3'
miRNA:   3'- uCGACUU---UGGUCA-----------AC-GCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 69572 0.72 0.52219
Target:  5'- -aCUGAAGCCGGg-GCcCUGGCGCCAc -3'
miRNA:   3'- ucGACUUUGGUCaaCGcGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 75095 0.74 0.377384
Target:  5'- cGCUGcgGCag---GCGCCGGCGCCGa -3'
miRNA:   3'- uCGACuuUGgucaaCGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 75117 0.71 0.582006
Target:  5'- gAGCUGggGCgCAGUcaaaUG-GCCGcGCGUCAg -3'
miRNA:   3'- -UCGACuuUG-GUCA----ACgCGGC-CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 75707 0.67 0.808143
Target:  5'- cGGCgcgaAGACUGG-UGCGCCccgcgGGCGCCGg -3'
miRNA:   3'- -UCGac--UUUGGUCaACGCGG-----CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 75820 0.67 0.770881
Target:  5'- cGGCaGAAAcCCAGUagcuuucuaugcaUGCGCCacgaGGCGCUg -3'
miRNA:   3'- -UCGaCUUU-GGUCA-------------ACGCGG----CCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 78511 0.66 0.833753
Target:  5'- cGgUGAGGCCAGUaaccaucGCGCCGuGC-CCGg -3'
miRNA:   3'- uCgACUUUGGUCAa------CGCGGC-CGcGGU- -5'
24752 3' -57.6 NC_005264.1 + 81019 0.67 0.799278
Target:  5'- uGGUcGAAGCCAGcgGCGCCuaccCGCCGu -3'
miRNA:   3'- -UCGaCUUUGGUCaaCGCGGcc--GCGGU- -5'
24752 3' -57.6 NC_005264.1 + 81771 0.66 0.849928
Target:  5'- cGGC--AGACCGGUUGcCGUCGauaaaccacGCGCCAg -3'
miRNA:   3'- -UCGacUUUGGUCAAC-GCGGC---------CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 82342 0.68 0.741303
Target:  5'- uGCUGAGuagacgcacguguGCCAGgcagGCGCgucgaucCGGUGCCGg -3'
miRNA:   3'- uCGACUU-------------UGGUCaa--CGCG-------GCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 86131 0.75 0.36926
Target:  5'- uGUcGAAGCgAGUUGCGCCGcgcuccGCGCCAa -3'
miRNA:   3'- uCGaCUUUGgUCAACGCGGC------CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 87735 0.7 0.602297
Target:  5'- uGCgcc--CCAGcucgGCGCCGGCGCCu -3'
miRNA:   3'- uCGacuuuGGUCaa--CGCGGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 88135 0.68 0.752876
Target:  5'- gGGCUGAuGGCCGGUUacuucaagacGuCGCCgguGGCGCUAa -3'
miRNA:   3'- -UCGACU-UUGGUCAA----------C-GCGG---CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 91051 0.69 0.693805
Target:  5'- gAGCgaGAAGCCGag-GCGCuucugcaaCGGCGCCAg -3'
miRNA:   3'- -UCGa-CUUUGGUcaaCGCG--------GCCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.