miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 3' -57.6 NC_005264.1 + 104162 0.69 0.653278
Target:  5'- ---aGAGGCCGGgUGCGCCugcaGCGCCGg -3'
miRNA:   3'- ucgaCUUUGGUCaACGCGGc---CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 66720 0.69 0.663456
Target:  5'- cGCcggGGAGCaacaaGCGCCGGCGCCu -3'
miRNA:   3'- uCGa--CUUUGgucaaCGCGGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 4762 0.69 0.673609
Target:  5'- aGGCUGAugugcGCCuucUGCG-CGGCGCCGu -3'
miRNA:   3'- -UCGACUu----UGGucaACGCgGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 96101 0.69 0.683728
Target:  5'- -aCUGuuGCCgcGGUuuagGCGCCGGCGCUu -3'
miRNA:   3'- ucGACuuUGG--UCAa---CGCGGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 108493 0.69 0.683728
Target:  5'- cGCUGAuccucuCUAGUgggguacgGCGUCGuGCGCCAc -3'
miRNA:   3'- uCGACUuu----GGUCAa-------CGCGGC-CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 91051 0.69 0.693805
Target:  5'- gAGCgaGAAGCCGag-GCGCuucugcaaCGGCGCCAg -3'
miRNA:   3'- -UCGa-CUUUGGUcaaCGCG--------GCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 127032 0.68 0.703831
Target:  5'- uGC-GggGCCGGcagagGCGCCcgccacgacGGCGCCAc -3'
miRNA:   3'- uCGaCuuUGGUCaa---CGCGG---------CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 8005 0.68 0.703831
Target:  5'- uGC-GggGCCGGcagagGCGCCcgccacgacGGCGCCAc -3'
miRNA:   3'- uCGaCuuUGGUCaa---CGCGG---------CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 131982 0.68 0.713797
Target:  5'- cGCgacGAcaGGCCGGUgGCGgugggccgaCCGGCGCCAg -3'
miRNA:   3'- uCGa--CU--UUGGUCAaCGC---------GGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 136455 0.68 0.722707
Target:  5'- cGCUGAGGCC----GCGCucagagaCGGCGCCGc -3'
miRNA:   3'- uCGACUUUGGucaaCGCG-------GCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 37959 0.68 0.723693
Target:  5'- gGGCgguuAGCCAGUUGCGCggcacgUGGCGUUg -3'
miRNA:   3'- -UCGacu-UUGGUCAACGCG------GCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 153884 0.68 0.733511
Target:  5'- uGCUGcAGCgAGUUG-GCCGGC-CCGa -3'
miRNA:   3'- uCGACuUUGgUCAACgCGGCCGcGGU- -5'
24752 3' -57.6 NC_005264.1 + 152958 0.68 0.733511
Target:  5'- gGGCUGGgaaGGCCGuGgcGCGCCGggaccGCGCCc -3'
miRNA:   3'- -UCGACU---UUGGU-CaaCGCGGC-----CGCGGu -5'
24752 3' -57.6 NC_005264.1 + 82342 0.68 0.741303
Target:  5'- uGCUGAGuagacgcacguguGCCAGgcagGCGCgucgaucCGGUGCCGg -3'
miRNA:   3'- uCGACUU-------------UGGUCaa--CGCG-------GCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 132763 0.68 0.743241
Target:  5'- -uCUGu--CCGGgcGCGgCGGCGCCGa -3'
miRNA:   3'- ucGACuuuGGUCaaCGCgGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 19766 0.68 0.743241
Target:  5'- uGUUGAGccCCAGUaGCucuauGCCGGUGCCGc -3'
miRNA:   3'- uCGACUUu-GGUCAaCG-----CGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 33931 0.68 0.743241
Target:  5'- aGGCUGGgaaGGCCGuGgcGCGCCGggaccGCGCCc -3'
miRNA:   3'- -UCGACU---UUGGU-CaaCGCGGC-----CGCGGu -5'
24752 3' -57.6 NC_005264.1 + 40656 0.68 0.743241
Target:  5'- uGGCUGcgcGAGCCuuacuaCGCUGGCGCCGu -3'
miRNA:   3'- -UCGAC---UUUGGucaac-GCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 93381 0.68 0.752876
Target:  5'- gGGC-GAGACaCAGaUUGCagagGCCGGCGCg- -3'
miRNA:   3'- -UCGaCUUUG-GUC-AACG----CGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 125702 0.68 0.752876
Target:  5'- uGgaGAGACCGccgGCGCCuGGUGCCc -3'
miRNA:   3'- uCgaCUUUGGUcaaCGCGG-CCGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.