miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 3' -57.6 NC_005264.1 + 154397 1.08 0.002118
Target:  5'- gAGCUGAAACCAGUUGCGCCGGCGCCAu -3'
miRNA:   3'- -UCGACUUUGGUCAACGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 35370 1.08 0.002118
Target:  5'- gAGCUGAAACCAGUUGCGCCGGCGCCAu -3'
miRNA:   3'- -UCGACUUUGGUCAACGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 127451 0.78 0.244002
Target:  5'- aGGUUGAuGCCAGaacaugGCGCCGGCGCa- -3'
miRNA:   3'- -UCGACUuUGGUCaa----CGCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 8424 0.78 0.244002
Target:  5'- aGGUUGAuGCCAGaacaugGCGCCGGCGCa- -3'
miRNA:   3'- -UCGACUuUGGUCaa----CGCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 149243 0.76 0.308672
Target:  5'- cGCUG--GCCGGUgugGCGCUGGgGCCGa -3'
miRNA:   3'- uCGACuuUGGUCAa--CGCGGCCgCGGU- -5'
24752 3' -57.6 NC_005264.1 + 86131 0.75 0.36926
Target:  5'- uGUcGAAGCgAGUUGCGCCGcgcuccGCGCCAa -3'
miRNA:   3'- uCGaCUUUGgUCAACGCGGC------CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 75095 0.74 0.377384
Target:  5'- cGCUGcgGCag---GCGCCGGCGCCGa -3'
miRNA:   3'- uCGACuuUGgucaaCGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 68752 0.74 0.411059
Target:  5'- cGUUGGGgucGCCAGUcacgcgggacaUGuUGCCGGCGCCAa -3'
miRNA:   3'- uCGACUU---UGGUCA-----------AC-GCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 99558 0.72 0.474231
Target:  5'- cGaCUGggGCCGGUUGUccucucucgaGCCGGUGCgGa -3'
miRNA:   3'- uC-GACuuUGGUCAACG----------CGGCCGCGgU- -5'
24752 3' -57.6 NC_005264.1 + 103702 0.72 0.502761
Target:  5'- aAGUUGAgGGCCAGUggaGCGgCGGCGCg- -3'
miRNA:   3'- -UCGACU-UUGGUCAa--CGCgGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 69572 0.72 0.52219
Target:  5'- -aCUGAAGCCGGg-GCcCUGGCGCCAc -3'
miRNA:   3'- ucGACUUUGGUCaaCGcGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 101349 0.71 0.541903
Target:  5'- uAGCcGAGACCgcgGGgcGCGUCGGCGCg- -3'
miRNA:   3'- -UCGaCUUUGG---UCaaCGCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 75117 0.71 0.582006
Target:  5'- gAGCUGggGCgCAGUcaaaUG-GCCGcGCGUCAg -3'
miRNA:   3'- -UCGACuuUG-GUCA----ACgCGGC-CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 121856 0.7 0.592137
Target:  5'- gGGUUGGcggagGGCCGGUcGCGCUcGCGCCGu -3'
miRNA:   3'- -UCGACU-----UUGGUCAaCGCGGcCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 2830 0.7 0.592137
Target:  5'- gGGUUGGcggagGGCCGGUcGCGCUcGCGCCGu -3'
miRNA:   3'- -UCGACU-----UUGGUCAaCGCGGcCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 87735 0.7 0.602297
Target:  5'- uGCgcc--CCAGcucgGCGCCGGCGCCu -3'
miRNA:   3'- uCGacuuuGGUCaa--CGCGGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 66601 0.7 0.602297
Target:  5'- cGCUGGGcugcGCCGcGU--UGCCGGCGCCGu -3'
miRNA:   3'- uCGACUU----UGGU-CAacGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 21311 0.7 0.60535
Target:  5'- uGGCggacuuaUGGGugCAGUuguggcgcccguagaUGCGCCGGgGCCGg -3'
miRNA:   3'- -UCG-------ACUUugGUCA---------------ACGCGGCCgCGGU- -5'
24752 3' -57.6 NC_005264.1 + 117673 0.7 0.612479
Target:  5'- cGCcaaGAGCCAGUggugGUGUCGGCGUCGa -3'
miRNA:   3'- uCGac-UUUGGUCAa---CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 14667 0.7 0.612479
Target:  5'- cGGCaGAGACCA--UGCuGCCGGgGCCc -3'
miRNA:   3'- -UCGaCUUUGGUcaACG-CGGCCgCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.