miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 3' -57.6 NC_005264.1 + 1012 0.66 0.816849
Target:  5'- cGGCgGGAACCGGUUuuaccuauucCGCCGGCcguaacugGCCAc -3'
miRNA:   3'- -UCGaCUUUGGUCAAc---------GCGGCCG--------CGGU- -5'
24752 3' -57.6 NC_005264.1 + 2393 0.67 0.781107
Target:  5'- cGCaGGAGCCcg--GCGCCGGCcuGCCu -3'
miRNA:   3'- uCGaCUUUGGucaaCGCGGCCG--CGGu -5'
24752 3' -57.6 NC_005264.1 + 2830 0.7 0.592137
Target:  5'- gGGUUGGcggagGGCCGGUcGCGCUcGCGCCGu -3'
miRNA:   3'- -UCGACU-----UUGGUCAaCGCGGcCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 4762 0.69 0.673609
Target:  5'- aGGCUGAugugcGCCuucUGCG-CGGCGCCGu -3'
miRNA:   3'- -UCGACUu----UGGucaACGCgGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 8005 0.68 0.703831
Target:  5'- uGC-GggGCCGGcagagGCGCCcgccacgacGGCGCCAc -3'
miRNA:   3'- uCGaCuuUGGUCaa---CGCGG---------CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 8365 0.66 0.849928
Target:  5'- cGCUGAuGCUuaccgGCGCCGGaCGCg- -3'
miRNA:   3'- uCGACUuUGGucaa-CGCGGCC-GCGgu -5'
24752 3' -57.6 NC_005264.1 + 8424 0.78 0.244002
Target:  5'- aGGUUGAuGCCAGaacaugGCGCCGGCGCa- -3'
miRNA:   3'- -UCGACUuUGGUCaa----CGCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 8477 0.66 0.849928
Target:  5'- cAGCUGGGuccccaagcAgCAGagUGgGCCGGCGCa- -3'
miRNA:   3'- -UCGACUU---------UgGUCa-ACgCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 13098 0.66 0.849928
Target:  5'- aGGCUc--GCCuc-UGCccGCCGGCGCCAc -3'
miRNA:   3'- -UCGAcuuUGGucaACG--CGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 14667 0.7 0.612479
Target:  5'- cGGCaGAGACCA--UGCuGCCGGgGCCc -3'
miRNA:   3'- -UCGaCUUUGGUcaACG-CGGCCgCGGu -5'
24752 3' -57.6 NC_005264.1 + 19766 0.68 0.743241
Target:  5'- uGUUGAGccCCAGUaGCucuauGCCGGUGCCGc -3'
miRNA:   3'- uCGACUUu-GGUCAaCG-----CGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 21311 0.7 0.60535
Target:  5'- uGGCggacuuaUGGGugCAGUuguggcgcccguagaUGCGCCGGgGCCGg -3'
miRNA:   3'- -UCG-------ACUUugGUCA---------------ACGCGGCCgCGGU- -5'
24752 3' -57.6 NC_005264.1 + 21529 0.66 0.828756
Target:  5'- cGCUGGGacagcACCGGgcgaccguuuauggUGUucuccgaggacGCCGGCGCCGa -3'
miRNA:   3'- uCGACUU-----UGGUCa-------------ACG-----------CGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 26642 0.67 0.808143
Target:  5'- ----aGAACCuuagcgcgGCGCCGGCGCCGc -3'
miRNA:   3'- ucgacUUUGGucaa----CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 33931 0.68 0.743241
Target:  5'- aGGCUGGgaaGGCCGuGgcGCGCCGggaccGCGCCc -3'
miRNA:   3'- -UCGACU---UUGGU-CaaCGCGGC-----CGCGGu -5'
24752 3' -57.6 NC_005264.1 + 35370 1.08 0.002118
Target:  5'- gAGCUGAAACCAGUUGCGCCGGCGCCAu -3'
miRNA:   3'- -UCGACUUUGGUCAACGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 36962 0.66 0.825389
Target:  5'- cGCac-GACagaGGUUgcGCGCUGGCGCCAu -3'
miRNA:   3'- uCGacuUUGg--UCAA--CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 37959 0.68 0.723693
Target:  5'- gGGCgguuAGCCAGUUGCGCggcacgUGGCGUUg -3'
miRNA:   3'- -UCGacu-UUGGUCAACGCG------GCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 40656 0.68 0.743241
Target:  5'- uGGCUGcgcGAGCCuuacuaCGCUGGCGCCGu -3'
miRNA:   3'- -UCGAC---UUUGGucaac-GCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 42134 0.67 0.807264
Target:  5'- cGCUGAGACCgcacgagAGaacaaaagGCGCUGGCGUa- -3'
miRNA:   3'- uCGACUUUGG-------UCaa------CGCGGCCGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.