miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 3' -57.6 NC_005264.1 + 161161 0.67 0.807264
Target:  5'- cGCUGAGACCgcacgagAGaacaaaagGCGCUGGCGUa- -3'
miRNA:   3'- uCGACUUUGG-------UCaa------CGCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 155989 0.66 0.825389
Target:  5'- cGCac-GACagaGGUUgcGCGCUGGCGCCAu -3'
miRNA:   3'- uCGacuUUGg--UCAA--CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 154949 0.66 0.826233
Target:  5'- cGGCgagGAGACCuccgacgccgcaucuGggGCGCCGaCGCCGc -3'
miRNA:   3'- -UCGa--CUUUGGu--------------CaaCGCGGCcGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 154397 1.08 0.002118
Target:  5'- gAGCUGAAACCAGUUGCGCCGGCGCCAu -3'
miRNA:   3'- -UCGACUUUGGUCAACGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 153884 0.68 0.733511
Target:  5'- uGCUGcAGCgAGUUG-GCCGGC-CCGa -3'
miRNA:   3'- uCGACuUUGgUCAACgCGGCCGcGGU- -5'
24752 3' -57.6 NC_005264.1 + 152958 0.68 0.733511
Target:  5'- gGGCUGGgaaGGCCGuGgcGCGCCGggaccGCGCCc -3'
miRNA:   3'- -UCGACU---UUGGU-CaaCGCGGC-----CGCGGu -5'
24752 3' -57.6 NC_005264.1 + 150063 0.66 0.841936
Target:  5'- aGGCau-GACCGcaucGUUGUGcCCGGCGCUg -3'
miRNA:   3'- -UCGacuUUGGU----CAACGC-GGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 149243 0.76 0.308672
Target:  5'- cGCUG--GCCGGUgugGCGCUGGgGCCGa -3'
miRNA:   3'- uCGACuuUGGUCAa--CGCGGCCgCGGU- -5'
24752 3' -57.6 NC_005264.1 + 144645 0.67 0.798383
Target:  5'- cAGgUaAAACCGGUuagccggcauucuUGCGCCGaGCGUCAg -3'
miRNA:   3'- -UCgAcUUUGGUCA-------------ACGCGGC-CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 141677 0.67 0.771817
Target:  5'- gAGCUGGGAUCGGgUGaCuaCGGCGaCCAu -3'
miRNA:   3'- -UCGACUUUGGUCaAC-GcgGCCGC-GGU- -5'
24752 3' -57.6 NC_005264.1 + 136455 0.68 0.722707
Target:  5'- cGCUGAGGCC----GCGCucagagaCGGCGCCGc -3'
miRNA:   3'- uCGACUUUGGucaaCGCG-------GCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 136182 0.66 0.841936
Target:  5'- -uUUGucguuCUAGcgcgGCGCCGGCGCCGc -3'
miRNA:   3'- ucGACuuu--GGUCaa--CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 135164 0.67 0.808143
Target:  5'- aGGCaGAGGCCAGccGCGuaccucgguCCGaGCGCCGc -3'
miRNA:   3'- -UCGaCUUUGGUCaaCGC---------GGC-CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 132763 0.68 0.743241
Target:  5'- -uCUGu--CCGGgcGCGgCGGCGCCGa -3'
miRNA:   3'- ucGACuuuGGUCaaCGCgGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 131982 0.68 0.713797
Target:  5'- cGCgacGAcaGGCCGGUgGCGgugggccgaCCGGCGCCAg -3'
miRNA:   3'- uCGa--CU--UUGGUCAaCGC---------GGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 128095 0.67 0.808143
Target:  5'- cAGCgGcGACCGGc-GCGCCGGgaagaaCGCCAa -3'
miRNA:   3'- -UCGaCuUUGGUCaaCGCGGCC------GCGGU- -5'
24752 3' -57.6 NC_005264.1 + 127451 0.78 0.244002
Target:  5'- aGGUUGAuGCCAGaacaugGCGCCGGCGCa- -3'
miRNA:   3'- -UCGACUuUGGUCaa----CGCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 127392 0.66 0.849928
Target:  5'- cGCUGAuGCUuaccgGCGCCGGaCGCg- -3'
miRNA:   3'- uCGACUuUGGucaa-CGCGGCC-GCGgu -5'
24752 3' -57.6 NC_005264.1 + 127032 0.68 0.703831
Target:  5'- uGC-GggGCCGGcagagGCGCCcgccacgacGGCGCCAc -3'
miRNA:   3'- uCGaCuuUGGUCaa---CGCGG---------CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 125702 0.68 0.752876
Target:  5'- uGgaGAGACCGccgGCGCCuGGUGCCc -3'
miRNA:   3'- uCgaCUUUGGUcaaCGCGG-CCGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.