miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 3' -57.6 NC_005264.1 + 81019 0.67 0.799278
Target:  5'- uGGUcGAAGCCAGcgGCGCCuaccCGCCGu -3'
miRNA:   3'- -UCGaCUUUGGUCaaCGCGGcc--GCGGU- -5'
24752 3' -57.6 NC_005264.1 + 127032 0.68 0.703831
Target:  5'- uGC-GggGCCGGcagagGCGCCcgccacgacGGCGCCAc -3'
miRNA:   3'- uCGaCuuUGGUCaa---CGCGG---------CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 136455 0.68 0.722707
Target:  5'- cGCUGAGGCC----GCGCucagagaCGGCGCCGc -3'
miRNA:   3'- uCGACUUUGGucaaCGCG-------GCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 37959 0.68 0.723693
Target:  5'- gGGCgguuAGCCAGUUGCGCggcacgUGGCGUUg -3'
miRNA:   3'- -UCGacu-UUGGUCAACGCG------GCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 152958 0.68 0.733511
Target:  5'- gGGCUGGgaaGGCCGuGgcGCGCCGggaccGCGCCc -3'
miRNA:   3'- -UCGACU---UUGGU-CaaCGCGGC-----CGCGGu -5'
24752 3' -57.6 NC_005264.1 + 40656 0.68 0.743241
Target:  5'- uGGCUGcgcGAGCCuuacuaCGCUGGCGCCGu -3'
miRNA:   3'- -UCGAC---UUUGGucaac-GCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 88135 0.68 0.752876
Target:  5'- gGGCUGAuGGCCGGUUacuucaagacGuCGCCgguGGCGCUAa -3'
miRNA:   3'- -UCGACU-UUGGUCAA----------C-GCGG---CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 141677 0.67 0.771817
Target:  5'- gAGCUGGGAUCGGgUGaCuaCGGCGaCCAu -3'
miRNA:   3'- -UCGACUUUGGUCaAC-GcgGCCGC-GGU- -5'
24752 3' -57.6 NC_005264.1 + 121420 0.67 0.781107
Target:  5'- cGCaGGAGCCcg--GCGCCGGCcuGCCu -3'
miRNA:   3'- uCGaCUUUGGucaaCGCGGCCG--CGGu -5'
24752 3' -57.6 NC_005264.1 + 91051 0.69 0.693805
Target:  5'- gAGCgaGAAGCCGag-GCGCuucugcaaCGGCGCCAg -3'
miRNA:   3'- -UCGa-CUUUGGUcaaCGCG--------GCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 108493 0.69 0.683728
Target:  5'- cGCUGAuccucuCUAGUgggguacgGCGUCGuGCGCCAc -3'
miRNA:   3'- uCGACUuu----GGUCAa-------CGCGGC-CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 96101 0.69 0.683728
Target:  5'- -aCUGuuGCCgcGGUuuagGCGCCGGCGCUu -3'
miRNA:   3'- ucGACuuUGG--UCAa---CGCGGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 127451 0.78 0.244002
Target:  5'- aGGUUGAuGCCAGaacaugGCGCCGGCGCa- -3'
miRNA:   3'- -UCGACUuUGGUCaa----CGCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 75095 0.74 0.377384
Target:  5'- cGCUGcgGCag---GCGCCGGCGCCGa -3'
miRNA:   3'- uCGACuuUGgucaaCGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 75117 0.71 0.582006
Target:  5'- gAGCUGggGCgCAGUcaaaUG-GCCGcGCGUCAg -3'
miRNA:   3'- -UCGACuuUG-GUCA----ACgCGGC-CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 121856 0.7 0.592137
Target:  5'- gGGUUGGcggagGGCCGGUcGCGCUcGCGCCGu -3'
miRNA:   3'- -UCGACU-----UUGGUCAaCGCGGcCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 66601 0.7 0.602297
Target:  5'- cGCUGGGcugcGCCGcGU--UGCCGGCGCCGu -3'
miRNA:   3'- uCGACUU----UGGU-CAacGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 14667 0.7 0.612479
Target:  5'- cGGCaGAGACCA--UGCuGCCGGgGCCc -3'
miRNA:   3'- -UCGaCUUUGGUcaACG-CGGCCgCGGu -5'
24752 3' -57.6 NC_005264.1 + 104162 0.69 0.653278
Target:  5'- ---aGAGGCCGGgUGCGCCugcaGCGCCGg -3'
miRNA:   3'- ucgaCUUUGGUCaACGCGGc---CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 4762 0.69 0.673609
Target:  5'- aGGCUGAugugcGCCuucUGCG-CGGCGCCGu -3'
miRNA:   3'- -UCGACUu----UGGucaACGCgGCCGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.