miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 3' -57.6 NC_005264.1 + 92514 0.66 0.849928
Target:  5'- gAGUUGAcgGACuCGGUcagcGCGCCGGCGg-- -3'
miRNA:   3'- -UCGACU--UUG-GUCAa---CGCGGCCGCggu -5'
24752 3' -57.6 NC_005264.1 + 132763 0.68 0.743241
Target:  5'- -uCUGu--CCGGgcGCGgCGGCGCCGa -3'
miRNA:   3'- ucGACuuuGGUCaaCGCgGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 19766 0.68 0.743241
Target:  5'- uGUUGAGccCCAGUaGCucuauGCCGGUGCCGc -3'
miRNA:   3'- uCGACUUu-GGUCAaCG-----CGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 35370 1.08 0.002118
Target:  5'- gAGCUGAAACCAGUUGCGCCGGCGCCAu -3'
miRNA:   3'- -UCGACUUUGGUCAACGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 150063 0.66 0.841936
Target:  5'- aGGCau-GACCGcaucGUUGUGcCCGGCGCUg -3'
miRNA:   3'- -UCGacuUUGGU----CAACGC-GGCCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 136182 0.66 0.841936
Target:  5'- -uUUGucguuCUAGcgcgGCGCCGGCGCCGc -3'
miRNA:   3'- ucGACuuu--GGUCaa--CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 36962 0.66 0.825389
Target:  5'- cGCac-GACagaGGUUgcGCGCUGGCGCCAu -3'
miRNA:   3'- uCGacuUUGg--UCAA--CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 1012 0.66 0.816849
Target:  5'- cGGCgGGAACCGGUUuuaccuauucCGCCGGCcguaacugGCCAc -3'
miRNA:   3'- -UCGaCUUUGGUCAAc---------GCGGCCG--------CGGU- -5'
24752 3' -57.6 NC_005264.1 + 144645 0.67 0.798383
Target:  5'- cAGgUaAAACCGGUuagccggcauucuUGCGCCGaGCGUCAg -3'
miRNA:   3'- -UCgAcUUUGGUCA-------------ACGCGGC-CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 93381 0.68 0.752876
Target:  5'- gGGC-GAGACaCAGaUUGCagagGCCGGCGCg- -3'
miRNA:   3'- -UCGaCUUUG-GUC-AACG----CGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 2393 0.67 0.781107
Target:  5'- cGCaGGAGCCcg--GCGCCGGCcuGCCu -3'
miRNA:   3'- uCGaCUUUGGucaaCGCGGCCG--CGGu -5'
24752 3' -57.6 NC_005264.1 + 42134 0.67 0.807264
Target:  5'- cGCUGAGACCgcacgagAGaacaaaagGCGCUGGCGUa- -3'
miRNA:   3'- uCGACUUUGG-------UCaa------CGCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 81771 0.66 0.849928
Target:  5'- cGGC--AGACCGGUUGcCGUCGauaaaccacGCGCCAg -3'
miRNA:   3'- -UCGacUUUGGUCAAC-GCGGC---------CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 75820 0.67 0.770881
Target:  5'- cGGCaGAAAcCCAGUagcuuucuaugcaUGCGCCacgaGGCGCUg -3'
miRNA:   3'- -UCGaCUUU-GGUCA-------------ACGCGG----CCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 8365 0.66 0.849928
Target:  5'- cGCUGAuGCUuaccgGCGCCGGaCGCg- -3'
miRNA:   3'- uCGACUuUGGucaa-CGCGGCC-GCGgu -5'
24752 3' -57.6 NC_005264.1 + 128095 0.67 0.808143
Target:  5'- cAGCgGcGACCGGc-GCGCCGGgaagaaCGCCAa -3'
miRNA:   3'- -UCGaCuUUGGUCaaCGCGGCC------GCGGU- -5'
24752 3' -57.6 NC_005264.1 + 125702 0.68 0.752876
Target:  5'- uGgaGAGACCGccgGCGCCuGGUGCCc -3'
miRNA:   3'- uCgaCUUUGGUcaaCGCGG-CCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 33931 0.68 0.743241
Target:  5'- aGGCUGGgaaGGCCGuGgcGCGCCGggaccGCGCCc -3'
miRNA:   3'- -UCGACU---UUGGU-CaaCGCGGC-----CGCGGu -5'
24752 3' -57.6 NC_005264.1 + 104045 0.66 0.847551
Target:  5'- cGCgGAAAUCGGUuugccgacauccucUGCGCCGaccaccgcgcguGCGCCu -3'
miRNA:   3'- uCGaCUUUGGUCA--------------ACGCGGC------------CGCGGu -5'
24752 3' -57.6 NC_005264.1 + 78511 0.66 0.833753
Target:  5'- cGgUGAGGCCAGUaaccaucGCGCCGuGC-CCGg -3'
miRNA:   3'- uCgACUUUGGUCAa------CGCGGC-CGcGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.