miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 3' -57.6 NC_005264.1 + 26642 0.67 0.808143
Target:  5'- ----aGAACCuuagcgcgGCGCCGGCGCCGc -3'
miRNA:   3'- ucgacUUUGGucaa----CGCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 75707 0.67 0.808143
Target:  5'- cGGCgcgaAGACUGG-UGCGCCccgcgGGCGCCGg -3'
miRNA:   3'- -UCGac--UUUGGUCaACGCGG-----CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 135164 0.67 0.808143
Target:  5'- aGGCaGAGGCCAGccGCGuaccucgguCCGaGCGCCGc -3'
miRNA:   3'- -UCGaCUUUGGUCaaCGC---------GGC-CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 161161 0.67 0.807264
Target:  5'- cGCUGAGACCgcacgagAGaacaaaagGCGCUGGCGUa- -3'
miRNA:   3'- uCGACUUUGG-------UCaa------CGCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 42134 0.67 0.807264
Target:  5'- cGCUGAGACCgcacgagAGaacaaaagGCGCUGGCGUa- -3'
miRNA:   3'- uCGACUUUGG-------UCaa------CGCGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 43671 0.67 0.799278
Target:  5'- cGCUG-AACCGuucuuugGUGCCGGCGgCAu -3'
miRNA:   3'- uCGACuUUGGUcaa----CGCGGCCGCgGU- -5'
24752 3' -57.6 NC_005264.1 + 81019 0.67 0.799278
Target:  5'- uGGUcGAAGCCAGcgGCGCCuaccCGCCGu -3'
miRNA:   3'- -UCGaCUUUGGUCaaCGCGGcc--GCGGU- -5'
24752 3' -57.6 NC_005264.1 + 144645 0.67 0.798383
Target:  5'- cAGgUaAAACCGGUuagccggcauucuUGCGCCGaGCGUCAg -3'
miRNA:   3'- -UCgAcUUUGGUCA-------------ACGCGGC-CGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 101930 0.67 0.781107
Target:  5'- uGGCgcgcGAAACUGGcgGCGUCGGCcCCAc -3'
miRNA:   3'- -UCGa---CUUUGGUCaaCGCGGCCGcGGU- -5'
24752 3' -57.6 NC_005264.1 + 2393 0.67 0.781107
Target:  5'- cGCaGGAGCCcg--GCGCCGGCcuGCCu -3'
miRNA:   3'- uCGaCUUUGGucaaCGCGGCCG--CGGu -5'
24752 3' -57.6 NC_005264.1 + 121420 0.67 0.781107
Target:  5'- cGCaGGAGCCcg--GCGCCGGCcuGCCu -3'
miRNA:   3'- uCGaCUUUGGucaaCGCGGCCG--CGGu -5'
24752 3' -57.6 NC_005264.1 + 141677 0.67 0.771817
Target:  5'- gAGCUGGGAUCGGgUGaCuaCGGCGaCCAu -3'
miRNA:   3'- -UCGACUUUGGUCaAC-GcgGCCGC-GGU- -5'
24752 3' -57.6 NC_005264.1 + 75820 0.67 0.770881
Target:  5'- cGGCaGAAAcCCAGUagcuuucuaugcaUGCGCCacgaGGCGCUg -3'
miRNA:   3'- -UCGaCUUU-GGUCA-------------ACGCGG----CCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 125702 0.68 0.752876
Target:  5'- uGgaGAGACCGccgGCGCCuGGUGCCc -3'
miRNA:   3'- uCgaCUUUGGUcaaCGCGG-CCGCGGu -5'
24752 3' -57.6 NC_005264.1 + 93381 0.68 0.752876
Target:  5'- gGGC-GAGACaCAGaUUGCagagGCCGGCGCg- -3'
miRNA:   3'- -UCGaCUUUG-GUC-AACG----CGGCCGCGgu -5'
24752 3' -57.6 NC_005264.1 + 88135 0.68 0.752876
Target:  5'- gGGCUGAuGGCCGGUUacuucaagacGuCGCCgguGGCGCUAa -3'
miRNA:   3'- -UCGACU-UUGGUCAA----------C-GCGG---CCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 132763 0.68 0.743241
Target:  5'- -uCUGu--CCGGgcGCGgCGGCGCCGa -3'
miRNA:   3'- ucGACuuuGGUCaaCGCgGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 19766 0.68 0.743241
Target:  5'- uGUUGAGccCCAGUaGCucuauGCCGGUGCCGc -3'
miRNA:   3'- uCGACUUu-GGUCAaCG-----CGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 40656 0.68 0.743241
Target:  5'- uGGCUGcgcGAGCCuuacuaCGCUGGCGCCGu -3'
miRNA:   3'- -UCGAC---UUUGGucaac-GCGGCCGCGGU- -5'
24752 3' -57.6 NC_005264.1 + 33931 0.68 0.743241
Target:  5'- aGGCUGGgaaGGCCGuGgcGCGCCGggaccGCGCCc -3'
miRNA:   3'- -UCGACU---UUGGU-CaaCGCGGC-----CGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.