miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 5' -51.2 NC_005264.1 + 154432 1.08 0.00975
Target:  5'- cAUCAACCUCGACAACAACAGCUCCGGc -3'
miRNA:   3'- -UAGUUGGAGCUGUUGUUGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 35405 1.08 0.00975
Target:  5'- cAUCAACCUCGACAACAACAGCUCCGGc -3'
miRNA:   3'- -UAGUUGGAGCUGUUGUUGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 53856 0.88 0.170958
Target:  5'- uGUCAAUCUCGuACAGCAACAGCUCCa- -3'
miRNA:   3'- -UAGUUGGAGC-UGUUGUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 72910 0.79 0.513693
Target:  5'- uUCGGCCUCGACAGCGucgaAGCcugCCGGu -3'
miRNA:   3'- uAGUUGGAGCUGUUGUug--UCGa--GGCC- -5'
24752 5' -51.2 NC_005264.1 + 6004 0.75 0.731775
Target:  5'- cGUCGGCCcCGACgGGCGGggaGGCUCCGGg -3'
miRNA:   3'- -UAGUUGGaGCUG-UUGUUg--UCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 125031 0.75 0.731775
Target:  5'- cGUCGGCCcCGACgGGCGGggaGGCUCCGGg -3'
miRNA:   3'- -UAGUUGGaGCUG-UUGUUg--UCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 76026 0.74 0.780992
Target:  5'- aGUCGGCC--GACGACAGCGGCagCGGa -3'
miRNA:   3'- -UAGUUGGagCUGUUGUUGUCGagGCC- -5'
24752 5' -51.2 NC_005264.1 + 30606 0.73 0.808904
Target:  5'- -gCAGCC-CGGCGACGGCGGCggcgaCGGa -3'
miRNA:   3'- uaGUUGGaGCUGUUGUUGUCGag---GCC- -5'
24752 5' -51.2 NC_005264.1 + 149633 0.73 0.808904
Target:  5'- -gCAGCC-CGGCGACGGCGGCggcgaCGGa -3'
miRNA:   3'- uaGUUGGaGCUGUUGUUGUCGag---GCC- -5'
24752 5' -51.2 NC_005264.1 + 126018 0.72 0.85191
Target:  5'- gGUCuccuCCUCGGCGuggcccGCGGCGGCUCCu- -3'
miRNA:   3'- -UAGuu--GGAGCUGU------UGUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 6991 0.72 0.85191
Target:  5'- gGUCuccuCCUCGGCGuggcccGCGGCGGCUCCu- -3'
miRNA:   3'- -UAGuu--GGAGCUGU------UGUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 64902 0.72 0.875244
Target:  5'- --uGACCUCGAC-GCGA-AGCUCUGGa -3'
miRNA:   3'- uagUUGGAGCUGuUGUUgUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 106925 0.72 0.882568
Target:  5'- gGUCAcuuuuuCCUCGACAGCuGCGGCggCCGc -3'
miRNA:   3'- -UAGUu-----GGAGCUGUUGuUGUCGa-GGCc -5'
24752 5' -51.2 NC_005264.1 + 128898 0.71 0.889657
Target:  5'- cUCGuCCUCGACGACGGCgGGCUCa-- -3'
miRNA:   3'- uAGUuGGAGCUGUUGUUG-UCGAGgcc -5'
24752 5' -51.2 NC_005264.1 + 44561 0.71 0.892426
Target:  5'- cGUCAaacGCCgugcugggUGACGACGagguguucgaguucgGCAGCUCCGGc -3'
miRNA:   3'- -UAGU---UGGa-------GCUGUUGU---------------UGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 2635 0.71 0.90311
Target:  5'- uGUCAGCgggcagguugcgCUCuGCAGCGGCAGCUCUGa -3'
miRNA:   3'- -UAGUUG------------GAGcUGUUGUUGUCGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 112813 0.71 0.90311
Target:  5'- -gCAACCUCGAgGcACGGCAGCaugCCGu -3'
miRNA:   3'- uaGUUGGAGCUgU-UGUUGUCGa--GGCc -5'
24752 5' -51.2 NC_005264.1 + 16912 0.71 0.909466
Target:  5'- cGUCGGCCgcggaCGAUGGCGGCGGCguucuucCCGGu -3'
miRNA:   3'- -UAGUUGGa----GCUGUUGUUGUCGa------GGCC- -5'
24752 5' -51.2 NC_005264.1 + 37083 0.71 0.909466
Target:  5'- -cUAGCgaCG-CGGCGGCAGUUCCGGg -3'
miRNA:   3'- uaGUUGgaGCuGUUGUUGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 110753 0.7 0.921427
Target:  5'- cGUCGcCCUCaagcGCAACAGCAGCUCUu- -3'
miRNA:   3'- -UAGUuGGAGc---UGUUGUUGUCGAGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.