miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 5' -51.2 NC_005264.1 + 635 0.68 0.966218
Target:  5'- --aGGCgaCGAUAACGACAGCgaCCGGc -3'
miRNA:   3'- uagUUGgaGCUGUUGUUGUCGa-GGCC- -5'
24752 5' -51.2 NC_005264.1 + 160377 0.69 0.951244
Target:  5'- -gCAGCCgCGAaGGCc-CAGCUCCGGg -3'
miRNA:   3'- uaGUUGGaGCUgUUGuuGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 112333 0.69 0.951244
Target:  5'- cUCGugUUCGGCuucGAgGGCAGCUuuGGg -3'
miRNA:   3'- uAGUugGAGCUG---UUgUUGUCGAggCC- -5'
24752 5' -51.2 NC_005264.1 + 69148 0.69 0.951244
Target:  5'- gAUCGGCCagGAgaGACGugAGCUCgGGg -3'
miRNA:   3'- -UAGUUGGagCUg-UUGUugUCGAGgCC- -5'
24752 5' -51.2 NC_005264.1 + 97601 0.69 0.951244
Target:  5'- -gCuuCCUCGGCcGCGGCGGCUaCGGc -3'
miRNA:   3'- uaGuuGGAGCUGuUGUUGUCGAgGCC- -5'
24752 5' -51.2 NC_005264.1 + 152384 0.69 0.951244
Target:  5'- -cCGGCCuaUCGGCGGCGAUccGCUUCGGa -3'
miRNA:   3'- uaGUUGG--AGCUGUUGUUGu-CGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 127250 0.69 0.959202
Target:  5'- -gCGGCCaUCGGCcgaagccGCAGCAGCUCCc- -3'
miRNA:   3'- uaGUUGG-AGCUGu------UGUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 68377 0.69 0.962473
Target:  5'- -aCGACCUCGgugaagaGCAACGACucGCUCUGcGg -3'
miRNA:   3'- uaGUUGGAGC-------UGUUGUUGu-CGAGGC-C- -5'
24752 5' -51.2 NC_005264.1 + 80409 0.69 0.964209
Target:  5'- uUCuACCgCGACGACAGCuGCugcccccgccagcucUCCGGg -3'
miRNA:   3'- uAGuUGGaGCUGUUGUUGuCG---------------AGGCC- -5'
24752 5' -51.2 NC_005264.1 + 63575 0.69 0.9469
Target:  5'- aAUCcucCCUCGGgggcauCGACGAUGGCUCUGGg -3'
miRNA:   3'- -UAGuu-GGAGCU------GUUGUUGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 32777 0.69 0.9469
Target:  5'- aAUCAucGCCaCGGCAGCGACGG-UCUGGc -3'
miRNA:   3'- -UAGU--UGGaGCUGUUGUUGUCgAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 157232 0.7 0.937468
Target:  5'- -gCGGCC-CGAUA---GCGGCUCCGGu -3'
miRNA:   3'- uaGUUGGaGCUGUuguUGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 72910 0.79 0.513693
Target:  5'- uUCGGCCUCGACAGCGucgaAGCcugCCGGu -3'
miRNA:   3'- uAGUUGGAGCUGUUGUug--UCGa--GGCC- -5'
24752 5' -51.2 NC_005264.1 + 125031 0.75 0.731775
Target:  5'- cGUCGGCCcCGACgGGCGGggaGGCUCCGGg -3'
miRNA:   3'- -UAGUUGGaGCUG-UUGUUg--UCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 149633 0.73 0.808904
Target:  5'- -gCAGCC-CGGCGACGGCGGCggcgaCGGa -3'
miRNA:   3'- uaGUUGGaGCUGUUGUUGUCGag---GCC- -5'
24752 5' -51.2 NC_005264.1 + 126018 0.72 0.85191
Target:  5'- gGUCuccuCCUCGGCGuggcccGCGGCGGCUCCu- -3'
miRNA:   3'- -UAGuu--GGAGCUGU------UGUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 64902 0.72 0.875244
Target:  5'- --uGACCUCGAC-GCGA-AGCUCUGGa -3'
miRNA:   3'- uagUUGGAGCUGuUGUUgUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 2635 0.71 0.90311
Target:  5'- uGUCAGCgggcagguugcgCUCuGCAGCGGCAGCUCUGa -3'
miRNA:   3'- -UAGUUG------------GAGcUGUUGUUGUCGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 37083 0.71 0.909466
Target:  5'- -cUAGCgaCG-CGGCGGCAGUUCCGGg -3'
miRNA:   3'- uaGUUGgaGCuGUUGUUGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 16912 0.71 0.909466
Target:  5'- cGUCGGCCgcggaCGAUGGCGGCGGCguucuucCCGGu -3'
miRNA:   3'- -UAGUUGGa----GCUGUUGUUGUCGa------GGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.