miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 5' -51.2 NC_005264.1 + 635 0.68 0.966218
Target:  5'- --aGGCgaCGAUAACGACAGCgaCCGGc -3'
miRNA:   3'- uagUUGgaGCUGUUGUUGUCGa-GGCC- -5'
24752 5' -51.2 NC_005264.1 + 2497 0.66 0.992679
Target:  5'- gGUCGgcggGCCUCGcGCGACuuCAGCg-CGGg -3'
miRNA:   3'- -UAGU----UGGAGC-UGUUGuuGUCGagGCC- -5'
24752 5' -51.2 NC_005264.1 + 2635 0.71 0.90311
Target:  5'- uGUCAGCgggcagguugcgCUCuGCAGCGGCAGCUCUGa -3'
miRNA:   3'- -UAGUUG------------GAGcUGUUGUUGUCGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 3001 0.68 0.969386
Target:  5'- -cCGACUgggcCGGCGGCu-CGGCUCUGGg -3'
miRNA:   3'- uaGUUGGa---GCUGUUGuuGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 3983 0.66 0.993655
Target:  5'- uGUUAGCCgcuUCGGCGGCGGCGGguuCUCUGu -3'
miRNA:   3'- -UAGUUGG---AGCUGUUGUUGUC---GAGGCc -5'
24752 5' -51.2 NC_005264.1 + 6004 0.75 0.731775
Target:  5'- cGUCGGCCcCGACgGGCGGggaGGCUCCGGg -3'
miRNA:   3'- -UAGUUGGaGCUG-UUGUUg--UCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 6991 0.72 0.85191
Target:  5'- gGUCuccuCCUCGGCGuggcccGCGGCGGCUCCu- -3'
miRNA:   3'- -UAGuu--GGAGCUGU------UGUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 8223 0.69 0.959202
Target:  5'- -gCGGCCaUCGGCcgaagccGCAGCAGCUCCc- -3'
miRNA:   3'- uaGUUGG-AGCUGu------UGUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 8789 0.66 0.990373
Target:  5'- cGUCGGCCagGACGGcCAGC-GCUCCu- -3'
miRNA:   3'- -UAGUUGGagCUGUU-GUUGuCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 14209 0.67 0.982108
Target:  5'- cAUCGGCCaCGGCGGaaaacaacgcCAugAGCUUCGGu -3'
miRNA:   3'- -UAGUUGGaGCUGUU----------GUugUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 14648 0.67 0.981268
Target:  5'- cUCAAuucCCUCG-CGGCAACGGCagagaccaugcugCCGGg -3'
miRNA:   3'- uAGUU---GGAGCuGUUGUUGUCGa------------GGCC- -5'
24752 5' -51.2 NC_005264.1 + 15586 0.7 0.932374
Target:  5'- -cCAAgCUUGcgggcGCAGCuGCGGCUCCGGc -3'
miRNA:   3'- uaGUUgGAGC-----UGUUGuUGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 15599 0.66 0.993655
Target:  5'- gAUUGAUCUUGACGAU--CAGCUCCc- -3'
miRNA:   3'- -UAGUUGGAGCUGUUGuuGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 16912 0.71 0.909466
Target:  5'- cGUCGGCCgcggaCGAUGGCGGCGGCguucuucCCGGu -3'
miRNA:   3'- -UAGUUGGa----GCUGUUGUUGUCGa------GGCC- -5'
24752 5' -51.2 NC_005264.1 + 19174 0.66 0.991589
Target:  5'- -aCAACCagGAU---GAUGGCUCCGGg -3'
miRNA:   3'- uaGUUGGagCUGuugUUGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 21202 0.67 0.982108
Target:  5'- cGUCGGCCgcagugguacuuUCGGCcGCGACGGCuuUCCGc -3'
miRNA:   3'- -UAGUUGG------------AGCUGuUGUUGUCG--AGGCc -5'
24752 5' -51.2 NC_005264.1 + 21545 0.69 0.951244
Target:  5'- ---cGCUUCGugGGCGACGGCaCUGGg -3'
miRNA:   3'- uaguUGGAGCugUUGUUGUCGaGGCC- -5'
24752 5' -51.2 NC_005264.1 + 22855 0.66 0.991589
Target:  5'- cGUCGuCCUCccuGACAcgucgaggguucGCAGCAuCUCCGGg -3'
miRNA:   3'- -UAGUuGGAG---CUGU------------UGUUGUcGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 25987 0.66 0.994523
Target:  5'- -aUAACCUCGGCAGaCGgguACAGUaUCGGc -3'
miRNA:   3'- uaGUUGGAGCUGUU-GU---UGUCGaGGCC- -5'
24752 5' -51.2 NC_005264.1 + 30385 0.67 0.979954
Target:  5'- cGUCgcgUCUCGGCGGCGGCGGUcgcgcgCCGGu -3'
miRNA:   3'- -UAGuu-GGAGCUGUUGUUGUCGa-----GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.