miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 5' -60.4 NC_005264.1 + 159534 1.09 0.001368
Target:  5'- cGGCCCGCCGUUCGGAAGCCCCUCACUc -3'
miRNA:   3'- -CCGGGCGGCAAGCCUUCGGGGAGUGA- -5'
24756 5' -60.4 NC_005264.1 + 40507 1.09 0.001368
Target:  5'- cGGCCCGCCGUUCGGAAGCCCCUCACUc -3'
miRNA:   3'- -CCGGGCGGCAAGCCUUCGGGGAGUGA- -5'
24756 5' -60.4 NC_005264.1 + 116375 0.74 0.301412
Target:  5'- gGGCCUGCCGUcgCGGGAGaCCUcuucgucggcuCUCGCUg -3'
miRNA:   3'- -CCGGGCGGCAa-GCCUUC-GGG-----------GAGUGA- -5'
24756 5' -60.4 NC_005264.1 + 105761 0.72 0.431878
Target:  5'- uGGCCCGUCGU--GGAAGCCCgccuCUCGa- -3'
miRNA:   3'- -CCGGGCGGCAagCCUUCGGG----GAGUga -5'
24756 5' -60.4 NC_005264.1 + 5153 0.71 0.482439
Target:  5'- cGGCCgCGCCGcaUcguccgaagccuauUCGGAGG-CCCUCGCg -3'
miRNA:   3'- -CCGG-GCGGC--A--------------AGCCUUCgGGGAGUGa -5'
24756 5' -60.4 NC_005264.1 + 89964 0.7 0.512984
Target:  5'- aGGCaaGCCGUgUGGAAGCCUUgCACa -3'
miRNA:   3'- -CCGggCGGCAaGCCUUCGGGGaGUGa -5'
24756 5' -60.4 NC_005264.1 + 14438 0.69 0.551019
Target:  5'- cGGCCUGCCcuccccaauaGgcauggCGGcAAGCCUCUCGCg -3'
miRNA:   3'- -CCGGGCGG----------Caa----GCC-UUCGGGGAGUGa -5'
24756 5' -60.4 NC_005264.1 + 152873 0.69 0.560669
Target:  5'- cGGCaUCGCCGcaCGGGuccggcAGUCCCUCGCc -3'
miRNA:   3'- -CCG-GGCGGCaaGCCU------UCGGGGAGUGa -5'
24756 5' -60.4 NC_005264.1 + 33847 0.69 0.560669
Target:  5'- cGGCaUCGCCGcaCGGGuccggcAGUCCCUCGCc -3'
miRNA:   3'- -CCG-GGCGGCaaGCCU------UCGGGGAGUGa -5'
24756 5' -60.4 NC_005264.1 + 65749 0.69 0.589871
Target:  5'- uGGUCCGCCG-UCGGccggcGCaCCCUUAUa -3'
miRNA:   3'- -CCGGGCGGCaAGCCuu---CG-GGGAGUGa -5'
24756 5' -60.4 NC_005264.1 + 88263 0.69 0.593787
Target:  5'- uGCCCGCCGccugUCcgaaucguacuacauGGgcGCCCC-CACUa -3'
miRNA:   3'- cCGGGCGGCa---AG---------------CCuuCGGGGaGUGA- -5'
24756 5' -60.4 NC_005264.1 + 140199 0.69 0.59967
Target:  5'- gGGCCUuuGCCGUguUC-GAAGUCCCUCGg- -3'
miRNA:   3'- -CCGGG--CGGCA--AGcCUUCGGGGAGUga -5'
24756 5' -60.4 NC_005264.1 + 96612 0.68 0.629173
Target:  5'- aGGCCCGCaGcUCGccAAGUCCUUCGCUg -3'
miRNA:   3'- -CCGGGCGgCaAGCc-UUCGGGGAGUGA- -5'
24756 5' -60.4 NC_005264.1 + 67434 0.68 0.639021
Target:  5'- -uCCCGCCuaUCuGAAGCCCCUgCACc -3'
miRNA:   3'- ccGGGCGGcaAGcCUUCGGGGA-GUGa -5'
24756 5' -60.4 NC_005264.1 + 64682 0.68 0.648864
Target:  5'- gGGCCUGCCGg-CGGGcaGGCCgugCUCGCc -3'
miRNA:   3'- -CCGGGCGGCaaGCCU--UCGGg--GAGUGa -5'
24756 5' -60.4 NC_005264.1 + 10019 0.68 0.658694
Target:  5'- aGCCCgcGCCGUUCGGAa--CCCagGCUa -3'
miRNA:   3'- cCGGG--CGGCAAGCCUucgGGGagUGA- -5'
24756 5' -60.4 NC_005264.1 + 129046 0.68 0.658694
Target:  5'- aGCCCgcGCCGUUCGGAa--CCCagGCUa -3'
miRNA:   3'- cCGGG--CGGCAAGCCUucgGGGagUGA- -5'
24756 5' -60.4 NC_005264.1 + 38850 0.68 0.658694
Target:  5'- aGCgUGCCuacgUCGcGGAGCUCCUCGCg -3'
miRNA:   3'- cCGgGCGGca--AGC-CUUCGGGGAGUGa -5'
24756 5' -60.4 NC_005264.1 + 138511 0.67 0.668505
Target:  5'- -cCCCGCCGUUCacuGcGGCCCCUUcaACg -3'
miRNA:   3'- ccGGGCGGCAAGc--CuUCGGGGAG--UGa -5'
24756 5' -60.4 NC_005264.1 + 135689 0.67 0.678289
Target:  5'- cGGCCUGCaCGgaCGGGccGGCCCucgggCUCAUg -3'
miRNA:   3'- -CCGGGCG-GCaaGCCU--UCGGG-----GAGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.