Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 154074 | 0.66 | 0.754621 |
Target: 5'- cGCCCGCCGUUC----GCCUCUCc-- -3' miRNA: 3'- cCGGGCGGCAAGccuuCGGGGAGuga -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 70146 | 0.67 | 0.707397 |
Target: 5'- uGCuuGCUGccgCGGcGGCgCCUCACUa -3' miRNA: 3'- cCGggCGGCaa-GCCuUCGgGGAGUGA- -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 126683 | 0.67 | 0.716992 |
Target: 5'- cGCCUGCCGgcUCGGAgggcucGGCCUC-CAUg -3' miRNA: 3'- cCGGGCGGCa-AGCCU------UCGGGGaGUGa -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 158781 | 0.66 | 0.726521 |
Target: 5'- -cCCCGCUG-UCGGGAGaUCCCgUCGCc -3' miRNA: 3'- ccGGGCGGCaAGCCUUC-GGGG-AGUGa -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 124522 | 0.66 | 0.735974 |
Target: 5'- gGGCCCGCCaacccUCGucGGCCUC-CGCg -3' miRNA: 3'- -CCGGGCGGca---AGCcuUCGGGGaGUGa -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 121436 | 0.66 | 0.741606 |
Target: 5'- cGGCCUGCCuaggaagaaagCGGAGGCCgCggaCACg -3' miRNA: 3'- -CCGGGCGGcaa--------GCCUUCGGgGa--GUGa -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 134680 | 0.66 | 0.745343 |
Target: 5'- uGUCUGCCGUUCaaGAGCCgCCcgCACUg -3' miRNA: 3'- cCGGGCGGCAAGccUUCGG-GGa-GUGA- -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 126908 | 0.66 | 0.745343 |
Target: 5'- cGCCCcagauGCgGcgUCGGAGGUCuCCUCGCc -3' miRNA: 3'- cCGGG-----CGgCa-AGCCUUCGG-GGAGUGa -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 52464 | 0.66 | 0.745343 |
Target: 5'- cGCCCGCCGUcggCGGuauuAGCauacuCCUCGa- -3' miRNA: 3'- cCGGGCGGCAa--GCCu---UCGg----GGAGUga -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 138511 | 0.67 | 0.668505 |
Target: 5'- -cCCCGCCGUUCacuGcGGCCCCUUcaACg -3' miRNA: 3'- ccGGGCGGCAAGc--CuUCGGGGAG--UGa -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 129046 | 0.68 | 0.658694 |
Target: 5'- aGCCCgcGCCGUUCGGAa--CCCagGCUa -3' miRNA: 3'- cCGGG--CGGCAAGCCUucgGGGagUGA- -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 38850 | 0.68 | 0.658694 |
Target: 5'- aGCgUGCCuacgUCGcGGAGCUCCUCGCg -3' miRNA: 3'- cCGgGCGGca--AGC-CUUCGGGGAGUGa -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 116375 | 0.74 | 0.301412 |
Target: 5'- gGGCCUGCCGUcgCGGGAGaCCUcuucgucggcuCUCGCUg -3' miRNA: 3'- -CCGGGCGGCAa-GCCUUC-GGG-----------GAGUGA- -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 105761 | 0.72 | 0.431878 |
Target: 5'- uGGCCCGUCGU--GGAAGCCCgccuCUCGa- -3' miRNA: 3'- -CCGGGCGGCAagCCUUCGGG----GAGUga -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 5153 | 0.71 | 0.482439 |
Target: 5'- cGGCCgCGCCGcaUcguccgaagccuauUCGGAGG-CCCUCGCg -3' miRNA: 3'- -CCGG-GCGGC--A--------------AGCCUUCgGGGAGUGa -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 152873 | 0.69 | 0.560669 |
Target: 5'- cGGCaUCGCCGcaCGGGuccggcAGUCCCUCGCc -3' miRNA: 3'- -CCG-GGCGGCaaGCCU------UCGGGGAGUGa -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 65749 | 0.69 | 0.589871 |
Target: 5'- uGGUCCGCCG-UCGGccggcGCaCCCUUAUa -3' miRNA: 3'- -CCGGGCGGCaAGCCuu---CG-GGGAGUGa -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 88263 | 0.69 | 0.593787 |
Target: 5'- uGCCCGCCGccugUCcgaaucguacuacauGGgcGCCCC-CACUa -3' miRNA: 3'- cCGGGCGGCa---AG---------------CCuuCGGGGaGUGA- -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 67434 | 0.68 | 0.639021 |
Target: 5'- -uCCCGCCuaUCuGAAGCCCCUgCACc -3' miRNA: 3'- ccGGGCGGcaAGcCUUCGGGGA-GUGa -5' |
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24756 | 5' | -60.4 | NC_005264.1 | + | 64682 | 0.68 | 0.648864 |
Target: 5'- gGGCCUGCCGg-CGGGcaGGCCgugCUCGCc -3' miRNA: 3'- -CCGGGCGGCaaGCCU--UCGGg--GAGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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