Results 1 - 20 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 1516 | 0.66 | 0.772868 |
Target: 5'- uGGCUgCGCCGUUUuuuGggGCCCCgcgGCg -3' miRNA: 3'- -CCGG-GCGGCAAGc--CuuCGGGGag-UGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 2409 | 0.66 | 0.741606 |
Target: 5'- cGGCCUGCCuaggaagaaagCGGAGGCCgCggaCACg -3' miRNA: 3'- -CCGGGCGGcaa--------GCCUUCGGgGa--GUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 5153 | 0.71 | 0.482439 |
Target: 5'- cGGCCgCGCCGcaUcguccgaagccuauUCGGAGG-CCCUCGCg -3' miRNA: 3'- -CCGG-GCGGC--A--------------AGCCUUCgGGGAGUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 5495 | 0.66 | 0.735974 |
Target: 5'- gGGCCCGCCaacccUCGucGGCCUC-CGCg -3' miRNA: 3'- -CCGGGCGGca---AGCcuUCGGGGaGUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 7656 | 0.67 | 0.716992 |
Target: 5'- cGCCUGCCGgcUCGGAgggcucGGCCUC-CAUg -3' miRNA: 3'- cCGGGCGGCa-AGCCU------UCGGGGaGUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 7882 | 0.66 | 0.745343 |
Target: 5'- cGCCCcagauGCgGcgUCGGAGGUCuCCUCGCc -3' miRNA: 3'- cCGGG-----CGgCa-AGCCUUCGG-GGAGUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 10019 | 0.68 | 0.658694 |
Target: 5'- aGCCCgcGCCGUUCGGAa--CCCagGCUa -3' miRNA: 3'- cCGGG--CGGCAAGCCUucgGGGagUGA- -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 14438 | 0.69 | 0.551019 |
Target: 5'- cGGCCUGCCcuccccaauaGgcauggCGGcAAGCCUCUCGCg -3' miRNA: 3'- -CCGGGCGG----------Caa----GCC-UUCGGGGAGUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 29409 | 0.66 | 0.772868 |
Target: 5'- cGGCaCCGCCGcaUCGGAggaGGUCaUgUCACUg -3' miRNA: 3'- -CCG-GGCGGCa-AGCCU---UCGG-GgAGUGA- -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 33847 | 0.69 | 0.560669 |
Target: 5'- cGGCaUCGCCGcaCGGGuccggcAGUCCCUCGCc -3' miRNA: 3'- -CCG-GGCGGCaaGCCU------UCGGGGAGUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 35047 | 0.66 | 0.754621 |
Target: 5'- cGCCCGCCGUUC----GCCUCUCc-- -3' miRNA: 3'- cCGGGCGGCAAGccuuCGGGGAGuga -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 35796 | 0.66 | 0.763798 |
Target: 5'- uGGCgCCGUCGUggCGGgcGCCUCUgccggcccCGCa -3' miRNA: 3'- -CCG-GGCGGCAa-GCCuuCGGGGA--------GUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 38850 | 0.68 | 0.658694 |
Target: 5'- aGCgUGCCuacgUCGcGGAGCUCCUCGCg -3' miRNA: 3'- cCGgGCGGca--AGC-CUUCGGGGAGUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 39755 | 0.66 | 0.726521 |
Target: 5'- -cCCCGCUG-UCGGGAGaUCCCgUCGCc -3' miRNA: 3'- ccGGGCGGCaAGCCUUC-GGGG-AGUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 40507 | 1.09 | 0.001368 |
Target: 5'- cGGCCCGCCGUUCGGAAGCCCCUCACUc -3' miRNA: 3'- -CCGGGCGGCAAGCCUUCGGGGAGUGA- -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 40959 | 0.66 | 0.754621 |
Target: 5'- cGGCuuGCuCGUaacagUCuGGAAGCuugcgccgaCCCUCGCUu -3' miRNA: 3'- -CCGggCG-GCA-----AG-CCUUCG---------GGGAGUGA- -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 43330 | 0.66 | 0.763798 |
Target: 5'- aGGgCUGCCGccUCGGAGcacGCCCUgCGCa -3' miRNA: 3'- -CCgGGCGGCa-AGCCUU---CGGGGaGUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 49679 | 0.66 | 0.754621 |
Target: 5'- --gCCGCCaUUUGG-AGCUCCUCGCc -3' miRNA: 3'- ccgGGCGGcAAGCCuUCGGGGAGUGa -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 52464 | 0.66 | 0.745343 |
Target: 5'- cGCCCGCCGUcggCGGuauuAGCauacuCCUCGa- -3' miRNA: 3'- cCGGGCGGCAa--GCCu---UCGg----GGAGUga -5' |
|||||||
24756 | 5' | -60.4 | NC_005264.1 | + | 64682 | 0.68 | 0.648864 |
Target: 5'- gGGCCUGCCGg-CGGGcaGGCCgugCUCGCc -3' miRNA: 3'- -CCGGGCGGCaaGCCU--UCGGg--GAGUGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home