miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24759 5' -59.4 NC_005264.1 + 1889 0.66 0.782674
Target:  5'- uGGCAGAaagcuacAGACcCCGCCgCGaCUGCg -3'
miRNA:   3'- uCUGUCU-------UCUGaGGCGGgGCgGACGa -5'
24759 5' -59.4 NC_005264.1 + 158846 0.7 0.529102
Target:  5'- cGACAGAGaAC-CCGCCgCCGCCgaaugcgGCUa -3'
miRNA:   3'- uCUGUCUUcUGaGGCGG-GGCGGa------CGA- -5'
24759 5' -59.4 NC_005264.1 + 39701 0.71 0.490982
Target:  5'- uGGCAGAGGGgacaccCUCgGCCCCGUCgUGCc -3'
miRNA:   3'- uCUGUCUUCU------GAGgCGGGGCGG-ACGa -5'
24759 5' -59.4 NC_005264.1 + 41186 1.07 0.001968
Target:  5'- gAGACAGAAGACUCCGCCCCGCCUGCUc -3'
miRNA:   3'- -UCUGUCUUCUGAGGCGGGGCGGACGA- -5'
24759 5' -59.4 NC_005264.1 + 3348 0.66 0.773563
Target:  5'- uGGC-GAGGgucuuucGCUCCGCUCCGUCUGg- -3'
miRNA:   3'- uCUGuCUUC-------UGAGGCGGGGCGGACga -5'
24759 5' -59.4 NC_005264.1 + 5450 0.66 0.765259
Target:  5'- cGcCGGAGGAggucCUaaCCGCCCCGCCgcccaGCa -3'
miRNA:   3'- uCuGUCUUCU----GA--GGCGGGGCGGa----CGa -5'
24759 5' -59.4 NC_005264.1 + 63969 0.67 0.736949
Target:  5'- aAGACAGA--ACcCCGCUaCCGCUUGCc -3'
miRNA:   3'- -UCUGUCUucUGaGGCGG-GGCGGACGa -5'
24759 5' -59.4 NC_005264.1 + 75939 0.67 0.736949
Target:  5'- cGGACAGcguGGuCUCUaucgcgGCCgCCGCCUGUg -3'
miRNA:   3'- -UCUGUCu--UCuGAGG------CGG-GGCGGACGa -5'
24759 5' -59.4 NC_005264.1 + 20139 0.68 0.668228
Target:  5'- cGGGCAGgcGAUggCGCgCCGCCgGCg -3'
miRNA:   3'- -UCUGUCuuCUGagGCGgGGCGGaCGa -5'
24759 5' -59.4 NC_005264.1 + 77345 0.7 0.548571
Target:  5'- -cGCGGGAGAaguuggcgauCUCCGUCCCGUCUaGCg -3'
miRNA:   3'- ucUGUCUUCU----------GAGGCGGGGCGGA-CGa -5'
24759 5' -59.4 NC_005264.1 + 145559 0.68 0.638185
Target:  5'- uGGGCAGcc--CUCCGCCCCGUC-GCc -3'
miRNA:   3'- -UCUGUCuucuGAGGCGGGGCGGaCGa -5'
24759 5' -59.4 NC_005264.1 + 3417 0.67 0.698016
Target:  5'- cGGgGGAgGGACguagggCCGCgCCCGCgCUGCUc -3'
miRNA:   3'- uCUgUCU-UCUGa-----GGCG-GGGCG-GACGA- -5'
24759 5' -59.4 NC_005264.1 + 25689 0.66 0.783578
Target:  5'- gGGACGGGAcGCgcaUGCCCCGCCa--- -3'
miRNA:   3'- -UCUGUCUUcUGag-GCGGGGCGGacga -5'
24759 5' -59.4 NC_005264.1 + 27831 0.69 0.6081
Target:  5'- cGACGGAggggcAGACUCCGUCUCcagcgucgaaGCUUGCg -3'
miRNA:   3'- uCUGUCU-----UCUGAGGCGGGG----------CGGACGa -5'
24759 5' -59.4 NC_005264.1 + 2834 0.66 0.77448
Target:  5'- uGGCGGAGGgccggucgcGCUCgCGCCgUCGCCcGCUg -3'
miRNA:   3'- uCUGUCUUC---------UGAG-GCGG-GGCGGaCGA- -5'
24759 5' -59.4 NC_005264.1 + 12891 0.67 0.70785
Target:  5'- cGGACGGAccguCgagCCGCCCgGCCUcGCa -3'
miRNA:   3'- -UCUGUCUucu-Ga--GGCGGGgCGGA-CGa -5'
24759 5' -59.4 NC_005264.1 + 20 0.69 0.6081
Target:  5'- cGACAGAA-ACUgCGCCCCGCacccacgGCg -3'
miRNA:   3'- uCUGUCUUcUGAgGCGGGGCGga-----CGa -5'
24759 5' -59.4 NC_005264.1 + 3505 0.71 0.490982
Target:  5'- gGGGCAGggGAUccucgccgUCCGCCUCGUCgaaccGCg -3'
miRNA:   3'- -UCUGUCuuCUG--------AGGCGGGGCGGa----CGa -5'
24759 5' -59.4 NC_005264.1 + 151836 0.66 0.773563
Target:  5'- -aGCGGAAGACUggggccgCCGCUCCGgCgGCg -3'
miRNA:   3'- ucUGUCUUCUGA-------GGCGGGGCgGaCGa -5'
24759 5' -59.4 NC_005264.1 + 125999 0.66 0.759672
Target:  5'- gGGGCAGAcAGuuGCUgucuacgaucuucgcCgCGCCUCGCCUGCg -3'
miRNA:   3'- -UCUGUCU-UC--UGA---------------G-GCGGGGCGGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.