miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24759 5' -59.4 NC_005264.1 + 12891 0.67 0.70785
Target:  5'- cGGACGGAccguCgagCCGCCCgGCCUcGCa -3'
miRNA:   3'- -UCUGUCUucu-Ga--GGCGGGgCGGA-CGa -5'
24759 5' -59.4 NC_005264.1 + 3417 0.67 0.698016
Target:  5'- cGGgGGAgGGACguagggCCGCgCCCGCgCUGCUc -3'
miRNA:   3'- uCUgUCU-UCUGa-----GGCG-GGGCG-GACGA- -5'
24759 5' -59.4 NC_005264.1 + 122444 0.67 0.698016
Target:  5'- cGGgGGAgGGACguagggCCGCgCCCGCgCUGCUc -3'
miRNA:   3'- uCUgUCU-UCUGa-----GGCG-GGGCG-GACGA- -5'
24759 5' -59.4 NC_005264.1 + 29562 0.67 0.698016
Target:  5'- gAGGCAGAGaucACguugCCGCUCgGCCUGUUu -3'
miRNA:   3'- -UCUGUCUUc--UGa---GGCGGGgCGGACGA- -5'
24759 5' -59.4 NC_005264.1 + 63305 0.67 0.687137
Target:  5'- cGGgGGAugcGGACUCCcgccuaccggucaGCCCCGCCaaGCUg -3'
miRNA:   3'- uCUgUCU---UCUGAGG-------------CGGGGCGGa-CGA- -5'
24759 5' -59.4 NC_005264.1 + 20139 0.68 0.668228
Target:  5'- cGGGCAGgcGAUggCGCgCCGCCgGCg -3'
miRNA:   3'- -UCUGUCuuCUGagGCGgGGCGGaCGa -5'
24759 5' -59.4 NC_005264.1 + 16012 0.68 0.658231
Target:  5'- uGGCAGgcGACgaCCGCCgCGCCuccgUGCa -3'
miRNA:   3'- uCUGUCuuCUGa-GGCGGgGCGG----ACGa -5'
24759 5' -59.4 NC_005264.1 + 75707 0.68 0.648214
Target:  5'- cGGCGcGAAGACUggugCGCCCCGCggGCg -3'
miRNA:   3'- uCUGU-CUUCUGAg---GCGGGGCGgaCGa -5'
24759 5' -59.4 NC_005264.1 + 159511 0.68 0.648214
Target:  5'- uGGCGcGAcuACUCuCGCUCCGCUUGCa -3'
miRNA:   3'- uCUGU-CUucUGAG-GCGGGGCGGACGa -5'
24759 5' -59.4 NC_005264.1 + 145559 0.68 0.638185
Target:  5'- uGGGCAGcc--CUCCGCCCCGUC-GCc -3'
miRNA:   3'- -UCUGUCuucuGAGGCGGGGCGGaCGa -5'
24759 5' -59.4 NC_005264.1 + 7145 0.68 0.638185
Target:  5'- aGGGCAGccuGAGGCUaCGCCCUGCCgaGUa -3'
miRNA:   3'- -UCUGUC---UUCUGAgGCGGGGCGGa-CGa -5'
24759 5' -59.4 NC_005264.1 + 119047 0.69 0.6081
Target:  5'- cGACAGAA-ACUgCGCCCCGCacccacgGCg -3'
miRNA:   3'- uCUGUCUUcUGAgGCGGGGCGga-----CGa -5'
24759 5' -59.4 NC_005264.1 + 20 0.69 0.6081
Target:  5'- cGACAGAA-ACUgCGCCCCGCacccacgGCg -3'
miRNA:   3'- uCUGUCUUcUGAgGCGGGGCGga-----CGa -5'
24759 5' -59.4 NC_005264.1 + 27831 0.69 0.6081
Target:  5'- cGACGGAggggcAGACUCCGUCUCcagcgucgaaGCUUGCg -3'
miRNA:   3'- uCUGUCU-----UCUGAGGCGGGG----------CGGACGa -5'
24759 5' -59.4 NC_005264.1 + 5855 0.69 0.598097
Target:  5'- cGGACcuuuaGGAAGAC-CCGCgCCGCgaGCg -3'
miRNA:   3'- -UCUG-----UCUUCUGaGGCGgGGCGgaCGa -5'
24759 5' -59.4 NC_005264.1 + 78023 0.69 0.578169
Target:  5'- uGACGGcGAGGCUUCGCUCCGugcgccaugcCCUGCc -3'
miRNA:   3'- uCUGUC-UUCUGAGGCGGGGC----------GGACGa -5'
24759 5' -59.4 NC_005264.1 + 76677 0.7 0.55839
Target:  5'- cGGCAGAAGAuacCUCUGCCCaGCUUgGCg -3'
miRNA:   3'- uCUGUCUUCU---GAGGCGGGgCGGA-CGa -5'
24759 5' -59.4 NC_005264.1 + 34234 0.7 0.548571
Target:  5'- aAGACGGAcGGGUUUCGUCCCGCCucgUGCg -3'
miRNA:   3'- -UCUGUCU-UCUGAGGCGGGGCGG---ACGa -5'
24759 5' -59.4 NC_005264.1 + 77345 0.7 0.548571
Target:  5'- -cGCGGGAGAaguuggcgauCUCCGUCCCGUCUaGCg -3'
miRNA:   3'- ucUGUCUUCU----------GAGGCGGGGCGGA-CGa -5'
24759 5' -59.4 NC_005264.1 + 95002 0.7 0.529102
Target:  5'- aGGACAuaauGAAGAgcaUCUGCCCCGCggGCUg -3'
miRNA:   3'- -UCUGU----CUUCUg--AGGCGGGGCGgaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.