miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24762 3' -53.6 NC_005264.1 + 123536 0.66 0.975966
Target:  5'- gGGgGgacugGGCGUCCgcggagGGGGAGGGGUGGUc -3'
miRNA:   3'- -CCgCa----UUGCGGG------CCUUUCUCUACCGu -5'
24762 3' -53.6 NC_005264.1 + 150504 0.66 0.975966
Target:  5'- gGGCGUGgaugguGCGCCCagucacgaGGAAGGucAGgcGGCu -3'
miRNA:   3'- -CCGCAU------UGCGGG--------CCUUUC--UCuaCCGu -5'
24762 3' -53.6 NC_005264.1 + 31477 0.66 0.975966
Target:  5'- gGGCGUGgaugguGCGCCCagucacgaGGAAGGucAGgcGGCu -3'
miRNA:   3'- -CCGCAU------UGCGGG--------CCUUUC--UCuaCCGu -5'
24762 3' -53.6 NC_005264.1 + 4509 0.66 0.975966
Target:  5'- gGGgGgacugGGCGUCCgcggagGGGGAGGGGUGGUc -3'
miRNA:   3'- -CCgCa----UUGCGGG------CCUUUCUCUACCGu -5'
24762 3' -53.6 NC_005264.1 + 76405 0.66 0.973352
Target:  5'- gGGCGUGgcacauaggGCGCCCGGcgaaAAAGGGAa---- -3'
miRNA:   3'- -CCGCAU---------UGCGGGCC----UUUCUCUaccgu -5'
24762 3' -53.6 NC_005264.1 + 152117 0.66 0.973352
Target:  5'- cGGUGUccGCGCCgGGGGacaaguAGAGGUaGGCc -3'
miRNA:   3'- -CCGCAu-UGCGGgCCUU------UCUCUA-CCGu -5'
24762 3' -53.6 NC_005264.1 + 121914 0.66 0.970538
Target:  5'- gGGCGcGGCGCggCGGGGAGGGcgacGGCGa -3'
miRNA:   3'- -CCGCaUUGCGg-GCCUUUCUCua--CCGU- -5'
24762 3' -53.6 NC_005264.1 + 67003 0.66 0.970538
Target:  5'- cGGCGaguGCuGCCUGGAcGGAGc-GGCGg -3'
miRNA:   3'- -CCGCau-UG-CGGGCCUuUCUCuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 126637 0.66 0.970538
Target:  5'- cGCGUcgAGCaCCuCGGggGGGGAUGaGCc -3'
miRNA:   3'- cCGCA--UUGcGG-GCCuuUCUCUAC-CGu -5'
24762 3' -53.6 NC_005264.1 + 2888 0.66 0.970538
Target:  5'- gGGCGcGGCGCggCGGGGAGGGcgacGGCGa -3'
miRNA:   3'- -CCGCaUUGCGg-GCCUUUCUCua--CCGU- -5'
24762 3' -53.6 NC_005264.1 + 867 0.66 0.967518
Target:  5'- aGGCGUugccGCGCCCGGAcguacgacuGGGuGuacGGCc -3'
miRNA:   3'- -CCGCAu---UGCGGGCCU---------UUCuCua-CCGu -5'
24762 3' -53.6 NC_005264.1 + 35010 0.66 0.967518
Target:  5'- cGGC----CGCCgCGGAGgcaacgcugucgGGAGAUGGCu -3'
miRNA:   3'- -CCGcauuGCGG-GCCUU------------UCUCUACCGu -5'
24762 3' -53.6 NC_005264.1 + 119893 0.66 0.967518
Target:  5'- aGGCGUugccGCGCCCGGAcguacgacuGGGuGuacGGCc -3'
miRNA:   3'- -CCGCAu---UGCGGGCCU---------UUCuCua-CCGu -5'
24762 3' -53.6 NC_005264.1 + 131614 0.66 0.964285
Target:  5'- cGCGUGggcGCGCgCGGAGaAGAacaGAUGGUc -3'
miRNA:   3'- cCGCAU---UGCGgGCCUU-UCU---CUACCGu -5'
24762 3' -53.6 NC_005264.1 + 156586 0.66 0.960833
Target:  5'- cGGCGgcGACGaCCGcGAcGGAGgcGGCAa -3'
miRNA:   3'- -CCGCa-UUGCgGGC-CUuUCUCuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 37559 0.66 0.960833
Target:  5'- cGGCGgcGACGaCCGcGAcGGAGgcGGCAa -3'
miRNA:   3'- -CCGCa-UUGCgGGC-CUuUCUCuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 3460 0.67 0.958655
Target:  5'- -cCGUGGCGCCCGGugccgcauccacGAuGUGGCAc -3'
miRNA:   3'- ccGCAUUGCGGGCCuuu---------CUcUACCGU- -5'
24762 3' -53.6 NC_005264.1 + 20534 0.67 0.95601
Target:  5'- cGCGUuGCGCCCGuuGcauggcuuguauguGGGGAUGGUu -3'
miRNA:   3'- cCGCAuUGCGGGCcuU--------------UCUCUACCGu -5'
24762 3' -53.6 NC_005264.1 + 136951 0.67 0.954842
Target:  5'- aGGCGcAGCGCCCcacugugcGGAGucugcagucuuucuuGGAGgcGGCGu -3'
miRNA:   3'- -CCGCaUUGCGGG--------CCUU---------------UCUCuaCCGU- -5'
24762 3' -53.6 NC_005264.1 + 144303 0.67 0.953252
Target:  5'- cGcCGgcGCGCCCucaGggGGAGAcGGCGc -3'
miRNA:   3'- cC-GCauUGCGGGc--CuuUCUCUaCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.