Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24762 | 5' | -62.6 | NC_005264.1 | + | 154620 | 0.67 | 0.608993 |
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Target: 5'- uGCGgCUucgGCCGauggccGCGUCuCCGUGUCCCc -3' miRNA: 3'- gCGCgGG---UGGC------CGCAG-GGCAUAGGGa -5' |
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| 24762 | 5' | -62.6 | NC_005264.1 | + | 78659 | 0.66 | 0.627362 |
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Target: 5'- uGUGCCUcgucccacuauguGCCGGCGUCuCCGUAgugaUCgCg -3' miRNA: 3'- gCGCGGG-------------UGGCCGCAG-GGCAU----AGgGa -5' |
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| 24762 | 5' | -62.6 | NC_005264.1 | + | 24974 | 0.66 | 0.62833 |
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Target: 5'- cCGCGagaCCugCGGuUGUCCCcGUAccCCCUg -3' miRNA: 3'- -GCGCg--GGugGCC-GCAGGG-CAUa-GGGA- -5' |
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| 24762 | 5' | -62.6 | NC_005264.1 | + | 96154 | 0.66 | 0.638005 |
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Target: 5'- aCGCccCCCGcCCGGCG-CCgGUAguUCCCUu -3' miRNA: 3'- -GCGc-GGGU-GGCCGCaGGgCAU--AGGGA- -5' |
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| 24762 | 5' | -62.6 | NC_005264.1 | + | 51844 | 0.66 | 0.647677 |
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Target: 5'- gGCGCuCCGCgGGCGUCaCCGa--CUCUu -3' miRNA: 3'- gCGCG-GGUGgCCGCAG-GGCauaGGGA- -5' |
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| 24762 | 5' | -62.6 | NC_005264.1 | + | 118690 | 0.66 | 0.654441 |
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Target: 5'- aCGCGCUCGCgCGGCuuaccugcccUCCCGcucguaaucgccgcUAUCCCg -3' miRNA: 3'- -GCGCGGGUG-GCCGc---------AGGGC--------------AUAGGGa -5' |
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| 24762 | 5' | -62.6 | NC_005264.1 | + | 123758 | 0.66 | 0.666979 |
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Target: 5'- cCGCuGCCCgccgaGCCGGCGUCCgGggguggaCCg -3' miRNA: 3'- -GCG-CGGG-----UGGCCGCAGGgCauag---GGa -5' |
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| 24762 | 5' | -62.6 | NC_005264.1 | + | 4732 | 0.66 | 0.666979 |
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Target: 5'- cCGCuGCCCgccgaGCCGGCGUCCgGggguggaCCg -3' miRNA: 3'- -GCG-CGGG-----UGGCCGCAGGgCauag---GGa -5' |
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| 24762 | 5' | -62.6 | NC_005264.1 | + | 42701 | 0.66 | 0.666979 |
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Target: 5'- -uCGCCgGCCGGCGcUCCGUccUCCUg -3' miRNA: 3'- gcGCGGgUGGCCGCaGGGCAuaGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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