miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24807 5' -55 NC_005284.1 + 53873 0.99 0.005471
Target:  5'- gCACGAACAUGCCGAUGCC-ACGCCCGc -3'
miRNA:   3'- -GUGCUUGUACGGCUACGGuUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 8984 0.8 0.130436
Target:  5'- uGCGGACAccuucGCCGAgcaUGCCGACGCCUGc -3'
miRNA:   3'- gUGCUUGUa----CGGCU---ACGGUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 37321 0.75 0.269476
Target:  5'- gAUGAACAUGUCGAcguuggGCCcguugaaguAGCGCCCGg -3'
miRNA:   3'- gUGCUUGUACGGCUa-----CGG---------UUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 32396 0.74 0.276423
Target:  5'- -uCGAACAccUGCCGGcucGUCAGCGCCCa -3'
miRNA:   3'- guGCUUGU--ACGGCUa--CGGUUGCGGGc -5'
24807 5' -55 NC_005284.1 + 13259 0.72 0.407081
Target:  5'- -cUGAACGUGCUGaAUGCCGGCGaCUGg -3'
miRNA:   3'- guGCUUGUACGGC-UACGGUUGCgGGC- -5'
24807 5' -55 NC_005284.1 + 5921 0.71 0.43942
Target:  5'- aCGCGAACGacGCCGAgaugcaggcggcaguUGCgGACGCCaCGg -3'
miRNA:   3'- -GUGCUUGUa-CGGCU---------------ACGgUUGCGG-GC- -5'
24807 5' -55 NC_005284.1 + 44559 0.71 0.445278
Target:  5'- aGCGAACGUGCUuGUGUCGaucACGUCCu -3'
miRNA:   3'- gUGCUUGUACGGcUACGGU---UGCGGGc -5'
24807 5' -55 NC_005284.1 + 53564 0.7 0.465114
Target:  5'- aCAUGAGCGgcUGCCGgcGC--GCGCCCa -3'
miRNA:   3'- -GUGCUUGU--ACGGCuaCGguUGCGGGc -5'
24807 5' -55 NC_005284.1 + 33200 0.7 0.516587
Target:  5'- aACGcuucGGCAUGCCGcUGCgCGucgaACGCCCGc -3'
miRNA:   3'- gUGC----UUGUACGGCuACG-GU----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 26250 0.7 0.516587
Target:  5'- gGCGAACGUGCCGGguaugacgUGaaGGCGCuCCa -3'
miRNA:   3'- gUGCUUGUACGGCU--------ACggUUGCG-GGc -5'
24807 5' -55 NC_005284.1 + 8740 0.7 0.516587
Target:  5'- --gGAGCGcuUGCCGucgaggccUGCuCGACGCCCGg -3'
miRNA:   3'- gugCUUGU--ACGGCu-------ACG-GUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 36003 0.69 0.537818
Target:  5'- -cCGGACGUGUCGA--CCAggcGCGCCCa -3'
miRNA:   3'- guGCUUGUACGGCUacGGU---UGCGGGc -5'
24807 5' -55 NC_005284.1 + 25356 0.68 0.581101
Target:  5'- gCAUGggUgguuUGCCGuUGCCGcCGCCCc -3'
miRNA:   3'- -GUGCuuGu---ACGGCuACGGUuGCGGGc -5'
24807 5' -55 NC_005284.1 + 21804 0.68 0.581101
Target:  5'- gCACG-GCA-GCCGGUGgCGACggcguGCCCGg -3'
miRNA:   3'- -GUGCuUGUaCGGCUACgGUUG-----CGGGC- -5'
24807 5' -55 NC_005284.1 + 35373 0.68 0.592048
Target:  5'- aACGAACGgcgcGCCGAUcacGCCugcacCGCCCu -3'
miRNA:   3'- gUGCUUGUa---CGGCUA---CGGuu---GCGGGc -5'
24807 5' -55 NC_005284.1 + 21857 0.68 0.592048
Target:  5'- gGCGAugGUGCCGccGCCuAUGCagaCGu -3'
miRNA:   3'- gUGCUugUACGGCuaCGGuUGCGg--GC- -5'
24807 5' -55 NC_005284.1 + 30672 0.68 0.603028
Target:  5'- -uCGAGCAgccgGCCGGcggcuuucuUGCCGACGCgCu -3'
miRNA:   3'- guGCUUGUa---CGGCU---------ACGGUUGCGgGc -5'
24807 5' -55 NC_005284.1 + 38592 0.68 0.603028
Target:  5'- -cUGAGCAucUGCaCGAUGCCGcccaGCGCCa- -3'
miRNA:   3'- guGCUUGU--ACG-GCUACGGU----UGCGGgc -5'
24807 5' -55 NC_005284.1 + 54338 0.68 0.603028
Target:  5'- aGCGGAUuUGUagaGAUgGCaCGACGCCCGa -3'
miRNA:   3'- gUGCUUGuACGg--CUA-CG-GUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 17667 0.68 0.603028
Target:  5'- uCACGGGCGUcuaccugcGCgCGAucgUGCgCGACGCCCu -3'
miRNA:   3'- -GUGCUUGUA--------CG-GCU---ACG-GUUGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.