miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24807 5' -55 NC_005284.1 + 8591 0.65 0.754805
Target:  5'- aUACGAccgccGCAUGCgCGGUcucucGUCGACGgCCGg -3'
miRNA:   3'- -GUGCU-----UGUACG-GCUA-----CGGUUGCgGGC- -5'
24807 5' -55 NC_005284.1 + 39000 0.67 0.669105
Target:  5'- gGCGAcgcaacGCAUGCgCGAguUGCCAcgcauCGUCCGu -3'
miRNA:   3'- gUGCU------UGUACG-GCU--ACGGUu----GCGGGC- -5'
24807 5' -55 NC_005284.1 + 48872 0.66 0.701811
Target:  5'- gGCGGAgAaGUCGgcGCCGuggacACGCCCGc -3'
miRNA:   3'- gUGCUUgUaCGGCuaCGGU-----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 9663 0.66 0.712592
Target:  5'- uCGCGGGCAUGCgagCGAUGCgCGAaaGCCUu -3'
miRNA:   3'- -GUGCUUGUACG---GCUACG-GUUg-CGGGc -5'
24807 5' -55 NC_005284.1 + 21190 0.66 0.712592
Target:  5'- -uCGAGCAcGCgGA-GCCGguccugacgugcACGCCCGg -3'
miRNA:   3'- guGCUUGUaCGgCUaCGGU------------UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 8423 0.66 0.712592
Target:  5'- -uCGGACAugaUGCCGAgaugGuCCGGCgaGCCCGc -3'
miRNA:   3'- guGCUUGU---ACGGCUa---C-GGUUG--CGGGC- -5'
24807 5' -55 NC_005284.1 + 21563 0.66 0.723293
Target:  5'- gACGAGCAgGCCGc-GCgGGCGUUCGa -3'
miRNA:   3'- gUGCUUGUaCGGCuaCGgUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 50395 0.66 0.723293
Target:  5'- gACGAAaccguuGUGCCG-UGCCAcucgaaccaaucGCGCCaCGg -3'
miRNA:   3'- gUGCUUg-----UACGGCuACGGU------------UGCGG-GC- -5'
24807 5' -55 NC_005284.1 + 53772 0.66 0.733903
Target:  5'- aUACGGuu-UGCUGAUGCCGGCuGCUgCGg -3'
miRNA:   3'- -GUGCUuguACGGCUACGGUUG-CGG-GC- -5'
24807 5' -55 NC_005284.1 + 46435 0.67 0.651515
Target:  5'- aGCGAACGaaccgaucgccgucGCCGaAUGCCGccgaGCGUCCGa -3'
miRNA:   3'- gUGCUUGUa-------------CGGC-UACGGU----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 16692 0.68 0.636084
Target:  5'- gGCGucgGCGUGCCGcUGacguCCGACGCgCCGu -3'
miRNA:   3'- gUGCu--UGUACGGCuAC----GGUUGCG-GGC- -5'
24807 5' -55 NC_005284.1 + 10456 0.68 0.614034
Target:  5'- aCGCGGGCggcgcaaaGUGUCauGGUGCCGACGUuuGg -3'
miRNA:   3'- -GUGCUUG--------UACGG--CUACGGUUGCGggC- -5'
24807 5' -55 NC_005284.1 + 13259 0.72 0.407081
Target:  5'- -cUGAACGUGCUGaAUGCCGGCGaCUGg -3'
miRNA:   3'- guGCUUGUACGGC-UACGGUUGCgGGC- -5'
24807 5' -55 NC_005284.1 + 5921 0.71 0.43942
Target:  5'- aCGCGAACGacGCCGAgaugcaggcggcaguUGCgGACGCCaCGg -3'
miRNA:   3'- -GUGCUUGUa-CGGCU---------------ACGgUUGCGG-GC- -5'
24807 5' -55 NC_005284.1 + 44559 0.71 0.445278
Target:  5'- aGCGAACGUGCUuGUGUCGaucACGUCCu -3'
miRNA:   3'- gUGCUUGUACGGcUACGGU---UGCGGGc -5'
24807 5' -55 NC_005284.1 + 21804 0.68 0.581101
Target:  5'- gCACG-GCA-GCCGGUGgCGACggcguGCCCGg -3'
miRNA:   3'- -GUGCuUGUaCGGCUACgGUUG-----CGGGC- -5'
24807 5' -55 NC_005284.1 + 25356 0.68 0.581101
Target:  5'- gCAUGggUgguuUGCCGuUGCCGcCGCCCc -3'
miRNA:   3'- -GUGCuuGu---ACGGCuACGGUuGCGGGc -5'
24807 5' -55 NC_005284.1 + 21857 0.68 0.592048
Target:  5'- gGCGAugGUGCCGccGCCuAUGCagaCGu -3'
miRNA:   3'- gUGCUugUACGGCuaCGGuUGCGg--GC- -5'
24807 5' -55 NC_005284.1 + 54338 0.68 0.603028
Target:  5'- aGCGGAUuUGUagaGAUgGCaCGACGCCCGa -3'
miRNA:   3'- gUGCUUGuACGg--CUA-CG-GUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 30672 0.68 0.603028
Target:  5'- -uCGAGCAgccgGCCGGcggcuuucuUGCCGACGCgCu -3'
miRNA:   3'- guGCUUGUa---CGGCU---------ACGGUUGCGgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.