miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24807 5' -55 NC_005284.1 + 5460 0.67 0.647108
Target:  5'- uCGCGcacGCGUGCCG-UGCCAAccauCGCCg- -3'
miRNA:   3'- -GUGCu--UGUACGGCuACGGUU----GCGGgc -5'
24807 5' -55 NC_005284.1 + 5921 0.71 0.43942
Target:  5'- aCGCGAACGacGCCGAgaugcaggcggcaguUGCgGACGCCaCGg -3'
miRNA:   3'- -GUGCUUGUa-CGGCU---------------ACGgUUGCGG-GC- -5'
24807 5' -55 NC_005284.1 + 8311 0.66 0.712592
Target:  5'- gCACGAGCA-GCUaacGCCAGCGUCgGa -3'
miRNA:   3'- -GUGCUUGUaCGGcuaCGGUUGCGGgC- -5'
24807 5' -55 NC_005284.1 + 8423 0.66 0.712592
Target:  5'- -uCGGACAugaUGCCGAgaugGuCCGGCgaGCCCGc -3'
miRNA:   3'- guGCUUGU---ACGGCUa---C-GGUUG--CGGGC- -5'
24807 5' -55 NC_005284.1 + 8591 0.65 0.754805
Target:  5'- aUACGAccgccGCAUGCgCGGUcucucGUCGACGgCCGg -3'
miRNA:   3'- -GUGCU-----UGUACG-GCUA-----CGGUUGCgGGC- -5'
24807 5' -55 NC_005284.1 + 8740 0.7 0.516587
Target:  5'- --gGAGCGcuUGCCGucgaggccUGCuCGACGCCCGg -3'
miRNA:   3'- gugCUUGU--ACGGCu-------ACG-GUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 8984 0.8 0.130436
Target:  5'- uGCGGACAccuucGCCGAgcaUGCCGACGCCUGc -3'
miRNA:   3'- gUGCUUGUa----CGGCU---ACGGUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 9078 0.66 0.701811
Target:  5'- cCGCGAAgAUguacaGCCG-UGUCGACGCgCGg -3'
miRNA:   3'- -GUGCUUgUA-----CGGCuACGGUUGCGgGC- -5'
24807 5' -55 NC_005284.1 + 9663 0.66 0.712592
Target:  5'- uCGCGGGCAUGCgagCGAUGCgCGAaaGCCUu -3'
miRNA:   3'- -GUGCUUGUACG---GCUACG-GUUg-CGGGc -5'
24807 5' -55 NC_005284.1 + 10456 0.68 0.614034
Target:  5'- aCGCGGGCggcgcaaaGUGUCauGGUGCCGACGUuuGg -3'
miRNA:   3'- -GUGCUUG--------UACGG--CUACGGUUGCGggC- -5'
24807 5' -55 NC_005284.1 + 13259 0.72 0.407081
Target:  5'- -cUGAACGUGCUGaAUGCCGGCGaCUGg -3'
miRNA:   3'- guGCUUGUACGGC-UACGGUUGCgGGC- -5'
24807 5' -55 NC_005284.1 + 16204 0.65 0.754805
Target:  5'- cCGCGuGCGcucgGCCGAacgGCCGucuCGCUCGg -3'
miRNA:   3'- -GUGCuUGUa---CGGCUa--CGGUu--GCGGGC- -5'
24807 5' -55 NC_005284.1 + 16692 0.68 0.636084
Target:  5'- gGCGucgGCGUGCCGcUGacguCCGACGCgCCGu -3'
miRNA:   3'- gUGCu--UGUACGGCuAC----GGUUGCG-GGC- -5'
24807 5' -55 NC_005284.1 + 17667 0.68 0.603028
Target:  5'- uCACGGGCGUcuaccugcGCgCGAucgUGCgCGACGCCCu -3'
miRNA:   3'- -GUGCUUGUA--------CG-GCU---ACG-GUUGCGGGc -5'
24807 5' -55 NC_005284.1 + 18430 0.68 0.625056
Target:  5'- -uCGAACAUcGUCGcgGCCGGCGCgaUCGa -3'
miRNA:   3'- guGCUUGUA-CGGCuaCGGUUGCG--GGC- -5'
24807 5' -55 NC_005284.1 + 18757 0.66 0.733903
Target:  5'- gACGAGCAUaCCaAUcGCCAGuacCGCCCGu -3'
miRNA:   3'- gUGCUUGUAcGGcUA-CGGUU---GCGGGC- -5'
24807 5' -55 NC_005284.1 + 21190 0.66 0.712592
Target:  5'- -uCGAGCAcGCgGA-GCCGguccugacgugcACGCCCGg -3'
miRNA:   3'- guGCUUGUaCGgCUaCGGU------------UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 21563 0.66 0.723293
Target:  5'- gACGAGCAgGCCGc-GCgGGCGUUCGa -3'
miRNA:   3'- gUGCUUGUaCGGCuaCGgUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 21804 0.68 0.581101
Target:  5'- gCACG-GCA-GCCGGUGgCGACggcguGCCCGg -3'
miRNA:   3'- -GUGCuUGUaCGGCUACgGUUG-----CGGGC- -5'
24807 5' -55 NC_005284.1 + 21857 0.68 0.592048
Target:  5'- gGCGAugGUGCCGccGCCuAUGCagaCGu -3'
miRNA:   3'- gUGCUugUACGGCuaCGGuUGCGg--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.