miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24807 5' -55 NC_005284.1 + 54338 0.68 0.603028
Target:  5'- aGCGGAUuUGUagaGAUgGCaCGACGCCCGa -3'
miRNA:   3'- gUGCUUGuACGg--CUA-CG-GUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 53873 0.99 0.005471
Target:  5'- gCACGAACAUGCCGAUGCC-ACGCCCGc -3'
miRNA:   3'- -GUGCUUGUACGGCUACGGuUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 53772 0.66 0.733903
Target:  5'- aUACGGuu-UGCUGAUGCCGGCuGCUgCGg -3'
miRNA:   3'- -GUGCUuguACGGCUACGGUUG-CGG-GC- -5'
24807 5' -55 NC_005284.1 + 53564 0.7 0.465114
Target:  5'- aCAUGAGCGgcUGCCGgcGC--GCGCCCa -3'
miRNA:   3'- -GUGCUUGU--ACGGCuaCGguUGCGGGc -5'
24807 5' -55 NC_005284.1 + 50395 0.66 0.723293
Target:  5'- gACGAAaccguuGUGCCG-UGCCAcucgaaccaaucGCGCCaCGg -3'
miRNA:   3'- gUGCUUg-----UACGGCuACGGU------------UGCGG-GC- -5'
24807 5' -55 NC_005284.1 + 48872 0.66 0.701811
Target:  5'- gGCGGAgAaGUCGgcGCCGuggacACGCCCGc -3'
miRNA:   3'- gUGCUUgUaCGGCuaCGGU-----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 47793 0.65 0.754805
Target:  5'- gGCGAGCGccaUGUCGAgcgcGCCAuguACGCgCGu -3'
miRNA:   3'- gUGCUUGU---ACGGCUa---CGGU---UGCGgGC- -5'
24807 5' -55 NC_005284.1 + 46435 0.67 0.651515
Target:  5'- aGCGAACGaaccgaucgccgucGCCGaAUGCCGccgaGCGUCCGa -3'
miRNA:   3'- gUGCUUGUa-------------CGGC-UACGGU----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 44559 0.71 0.445278
Target:  5'- aGCGAACGUGCUuGUGUCGaucACGUCCu -3'
miRNA:   3'- gUGCUUGUACGGcUACGGU---UGCGGGc -5'
24807 5' -55 NC_005284.1 + 44102 0.67 0.669105
Target:  5'- aGCGAGgCccGCCG-UGUCGaucGCGCCCGc -3'
miRNA:   3'- gUGCUU-GuaCGGCuACGGU---UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 40391 0.67 0.680057
Target:  5'- aGCGcAGCAUGUCGgcGCCGAUuUCCGu -3'
miRNA:   3'- gUGC-UUGUACGGCuaCGGUUGcGGGC- -5'
24807 5' -55 NC_005284.1 + 39464 0.67 0.647108
Target:  5'- aCACGAucaccCAUuucgCGAUGCCGcuGCGCCCGc -3'
miRNA:   3'- -GUGCUu----GUAcg--GCUACGGU--UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 39000 0.67 0.669105
Target:  5'- gGCGAcgcaacGCAUGCgCGAguUGCCAcgcauCGUCCGu -3'
miRNA:   3'- gUGCU------UGUACG-GCU--ACGGUu----GCGGGC- -5'
24807 5' -55 NC_005284.1 + 38834 0.67 0.658119
Target:  5'- gGCGAACGUgagGCCGgcGUCG-CGCgCCGa -3'
miRNA:   3'- gUGCUUGUA---CGGCuaCGGUuGCG-GGC- -5'
24807 5' -55 NC_005284.1 + 38592 0.68 0.603028
Target:  5'- -cUGAGCAucUGCaCGAUGCCGcccaGCGCCa- -3'
miRNA:   3'- guGCUUGU--ACG-GCUACGGU----UGCGGgc -5'
24807 5' -55 NC_005284.1 + 38104 0.66 0.712592
Target:  5'- aGCG-GCAcGCCGAcGCCGgccucACGCUCGa -3'
miRNA:   3'- gUGCuUGUaCGGCUaCGGU-----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 37321 0.75 0.269476
Target:  5'- gAUGAACAUGUCGAcguuggGCCcguugaaguAGCGCCCGg -3'
miRNA:   3'- gUGCUUGUACGGCUa-----CGG---------UUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 37024 0.68 0.625056
Target:  5'- cCGCGAcgucaGCA-GCa---GCCAGCGCCCGa -3'
miRNA:   3'- -GUGCU-----UGUaCGgcuaCGGUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 36049 0.66 0.712592
Target:  5'- cCGCGAGCcccUGauaCGAcGUCGACGCCUGc -3'
miRNA:   3'- -GUGCUUGu--ACg--GCUaCGGUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 36003 0.69 0.537818
Target:  5'- -cCGGACGUGUCGA--CCAggcGCGCCCa -3'
miRNA:   3'- guGCUUGUACGGCUacGGU---UGCGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.