miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24807 5' -55 NC_005284.1 + 23071 0.66 0.701811
Target:  5'- aGCGAGCAugguaUGUCGAUGCgGcuacguacGCGCuuGa -3'
miRNA:   3'- gUGCUUGU-----ACGGCUACGgU--------UGCGggC- -5'
24807 5' -55 NC_005284.1 + 24391 0.67 0.642699
Target:  5'- gACGAucgACAUGCCGAccagcacacgcggGCCGAgcgcauCGCCCu -3'
miRNA:   3'- gUGCU---UGUACGGCUa------------CGGUU------GCGGGc -5'
24807 5' -55 NC_005284.1 + 25356 0.68 0.581101
Target:  5'- gCAUGggUgguuUGCCGuUGCCGcCGCCCc -3'
miRNA:   3'- -GUGCuuGu---ACGGCuACGGUuGCGGGc -5'
24807 5' -55 NC_005284.1 + 26250 0.7 0.516587
Target:  5'- gGCGAACGUGCCGGguaugacgUGaaGGCGCuCCa -3'
miRNA:   3'- gUGCUUGUACGGCU--------ACggUUGCG-GGc -5'
24807 5' -55 NC_005284.1 + 26330 0.65 0.754805
Target:  5'- gCAUGGACAUucuucagcgcgGCaCGGUcaacGCCGGCGCgCCGg -3'
miRNA:   3'- -GUGCUUGUA-----------CG-GCUA----CGGUUGCG-GGC- -5'
24807 5' -55 NC_005284.1 + 28275 0.67 0.684425
Target:  5'- gGCGAAC-UGCCGAUGCaucagacuggauCGCCa- -3'
miRNA:   3'- gUGCUUGuACGGCUACGguu---------GCGGgc -5'
24807 5' -55 NC_005284.1 + 30672 0.68 0.603028
Target:  5'- -uCGAGCAgccgGCCGGcggcuuucuUGCCGACGCgCu -3'
miRNA:   3'- guGCUUGUa---CGGCU---------ACGGUUGCGgGc -5'
24807 5' -55 NC_005284.1 + 32396 0.74 0.276423
Target:  5'- -uCGAACAccUGCCGGcucGUCAGCGCCCa -3'
miRNA:   3'- guGCUUGU--ACGGCUa--CGGUUGCGGGc -5'
24807 5' -55 NC_005284.1 + 33019 0.66 0.701811
Target:  5'- aGCGAcgcGCA-GCCGcucaGUGCCAGCggcaagagcaGCCCGc -3'
miRNA:   3'- gUGCU---UGUaCGGC----UACGGUUG----------CGGGC- -5'
24807 5' -55 NC_005284.1 + 33200 0.7 0.516587
Target:  5'- aACGcuucGGCAUGCCGcUGCgCGucgaACGCCCGc -3'
miRNA:   3'- gUGC----UUGUACGGCuACG-GU----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 33457 0.66 0.744411
Target:  5'- gCGCGAcACGcGCCcc-GCCAGuCGCCCGc -3'
miRNA:   3'- -GUGCU-UGUaCGGcuaCGGUU-GCGGGC- -5'
24807 5' -55 NC_005284.1 + 35373 0.68 0.592048
Target:  5'- aACGAACGgcgcGCCGAUcacGCCugcacCGCCCu -3'
miRNA:   3'- gUGCUUGUa---CGGCUA---CGGuu---GCGGGc -5'
24807 5' -55 NC_005284.1 + 36003 0.69 0.537818
Target:  5'- -cCGGACGUGUCGA--CCAggcGCGCCCa -3'
miRNA:   3'- guGCUUGUACGGCUacGGU---UGCGGGc -5'
24807 5' -55 NC_005284.1 + 36049 0.66 0.712592
Target:  5'- cCGCGAGCcccUGauaCGAcGUCGACGCCUGc -3'
miRNA:   3'- -GUGCUUGu--ACg--GCUaCGGUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 37024 0.68 0.625056
Target:  5'- cCGCGAcgucaGCA-GCa---GCCAGCGCCCGa -3'
miRNA:   3'- -GUGCU-----UGUaCGgcuaCGGUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 37321 0.75 0.269476
Target:  5'- gAUGAACAUGUCGAcguuggGCCcguugaaguAGCGCCCGg -3'
miRNA:   3'- gUGCUUGUACGGCUa-----CGG---------UUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 38104 0.66 0.712592
Target:  5'- aGCG-GCAcGCCGAcGCCGgccucACGCUCGa -3'
miRNA:   3'- gUGCuUGUaCGGCUaCGGU-----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 38592 0.68 0.603028
Target:  5'- -cUGAGCAucUGCaCGAUGCCGcccaGCGCCa- -3'
miRNA:   3'- guGCUUGU--ACG-GCUACGGU----UGCGGgc -5'
24807 5' -55 NC_005284.1 + 38834 0.67 0.658119
Target:  5'- gGCGAACGUgagGCCGgcGUCG-CGCgCCGa -3'
miRNA:   3'- gUGCUUGUA---CGGCuaCGGUuGCG-GGC- -5'
24807 5' -55 NC_005284.1 + 39000 0.67 0.669105
Target:  5'- gGCGAcgcaacGCAUGCgCGAguUGCCAcgcauCGUCCGu -3'
miRNA:   3'- gUGCU------UGUACG-GCU--ACGGUu----GCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.