miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24807 5' -55 NC_005284.1 + 30672 0.68 0.603028
Target:  5'- -uCGAGCAgccgGCCGGcggcuuucuUGCCGACGCgCu -3'
miRNA:   3'- guGCUUGUa---CGGCU---------ACGGUUGCGgGc -5'
24807 5' -55 NC_005284.1 + 10456 0.68 0.614034
Target:  5'- aCGCGGGCggcgcaaaGUGUCauGGUGCCGACGUuuGg -3'
miRNA:   3'- -GUGCUUG--------UACGG--CUACGGUUGCGggC- -5'
24807 5' -55 NC_005284.1 + 28275 0.67 0.684425
Target:  5'- gGCGAAC-UGCCGAUGCaucagacuggauCGCCa- -3'
miRNA:   3'- gUGCUUGuACGGCUACGguu---------GCGGgc -5'
24807 5' -55 NC_005284.1 + 40391 0.67 0.680057
Target:  5'- aGCGcAGCAUGUCGgcGCCGAUuUCCGu -3'
miRNA:   3'- gUGC-UUGUACGGCuaCGGUUGcGGGC- -5'
24807 5' -55 NC_005284.1 + 44102 0.67 0.669105
Target:  5'- aGCGAGgCccGCCG-UGUCGaucGCGCCCGc -3'
miRNA:   3'- gUGCUU-GuaCGGCuACGGU---UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 38834 0.67 0.658119
Target:  5'- gGCGAACGUgagGCCGgcGUCG-CGCgCCGa -3'
miRNA:   3'- gUGCUUGUA---CGGCuaCGGUuGCG-GGC- -5'
24807 5' -55 NC_005284.1 + 5460 0.67 0.647108
Target:  5'- uCGCGcacGCGUGCCG-UGCCAAccauCGCCg- -3'
miRNA:   3'- -GUGCu--UGUACGGCuACGGUU----GCGGgc -5'
24807 5' -55 NC_005284.1 + 39464 0.67 0.647108
Target:  5'- aCACGAucaccCAUuucgCGAUGCCGcuGCGCCCGc -3'
miRNA:   3'- -GUGCUu----GUAcg--GCUACGGU--UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 24391 0.67 0.642699
Target:  5'- gACGAucgACAUGCCGAccagcacacgcggGCCGAgcgcauCGCCCu -3'
miRNA:   3'- gUGCU---UGUACGGCUa------------CGGUU------GCGGGc -5'
24807 5' -55 NC_005284.1 + 37024 0.68 0.625056
Target:  5'- cCGCGAcgucaGCA-GCa---GCCAGCGCCCGa -3'
miRNA:   3'- -GUGCU-----UGUaCGgcuaCGGUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 23071 0.66 0.701811
Target:  5'- aGCGAGCAugguaUGUCGAUGCgGcuacguacGCGCuuGa -3'
miRNA:   3'- gUGCUUGU-----ACGGCUACGgU--------UGCGggC- -5'
24807 5' -55 NC_005284.1 + 9078 0.66 0.701811
Target:  5'- cCGCGAAgAUguacaGCCG-UGUCGACGCgCGg -3'
miRNA:   3'- -GUGCUUgUA-----CGGCuACGGUUGCGgGC- -5'
24807 5' -55 NC_005284.1 + 53873 0.99 0.005471
Target:  5'- gCACGAACAUGCCGAUGCC-ACGCCCGc -3'
miRNA:   3'- -GUGCUUGUACGGCUACGGuUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 47793 0.65 0.754805
Target:  5'- gGCGAGCGccaUGUCGAgcgcGCCAuguACGCgCGu -3'
miRNA:   3'- gUGCUUGU---ACGGCUa---CGGU---UGCGgGC- -5'
24807 5' -55 NC_005284.1 + 33457 0.66 0.744411
Target:  5'- gCGCGAcACGcGCCcc-GCCAGuCGCCCGc -3'
miRNA:   3'- -GUGCU-UGUaCGGcuaCGGUU-GCGGGC- -5'
24807 5' -55 NC_005284.1 + 18757 0.66 0.733903
Target:  5'- gACGAGCAUaCCaAUcGCCAGuacCGCCCGu -3'
miRNA:   3'- gUGCUUGUAcGGcUA-CGGUU---GCGGGC- -5'
24807 5' -55 NC_005284.1 + 36049 0.66 0.712592
Target:  5'- cCGCGAGCcccUGauaCGAcGUCGACGCCUGc -3'
miRNA:   3'- -GUGCUUGu--ACg--GCUaCGGUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 38104 0.66 0.712592
Target:  5'- aGCG-GCAcGCCGAcGCCGgccucACGCUCGa -3'
miRNA:   3'- gUGCuUGUaCGGCUaCGGU-----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 8311 0.66 0.712592
Target:  5'- gCACGAGCA-GCUaacGCCAGCGUCgGa -3'
miRNA:   3'- -GUGCUUGUaCGGcuaCGGUUGCGGgC- -5'
24807 5' -55 NC_005284.1 + 33019 0.66 0.701811
Target:  5'- aGCGAcgcGCA-GCCGcucaGUGCCAGCggcaagagcaGCCCGc -3'
miRNA:   3'- gUGCU---UGUaCGGC----UACGGUUG----------CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.