miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24807 5' -55 NC_005284.1 + 40391 0.67 0.680057
Target:  5'- aGCGcAGCAUGUCGgcGCCGAUuUCCGu -3'
miRNA:   3'- gUGC-UUGUACGGCuaCGGUUGcGGGC- -5'
24807 5' -55 NC_005284.1 + 39000 0.67 0.669105
Target:  5'- gGCGAcgcaacGCAUGCgCGAguUGCCAcgcauCGUCCGu -3'
miRNA:   3'- gUGCU------UGUACG-GCU--ACGGUu----GCGGGC- -5'
24807 5' -55 NC_005284.1 + 44102 0.67 0.669105
Target:  5'- aGCGAGgCccGCCG-UGUCGaucGCGCCCGc -3'
miRNA:   3'- gUGCUU-GuaCGGCuACGGU---UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 38834 0.67 0.658119
Target:  5'- gGCGAACGUgagGCCGgcGUCG-CGCgCCGa -3'
miRNA:   3'- gUGCUUGUA---CGGCuaCGGUuGCG-GGC- -5'
24807 5' -55 NC_005284.1 + 46435 0.67 0.651515
Target:  5'- aGCGAACGaaccgaucgccgucGCCGaAUGCCGccgaGCGUCCGa -3'
miRNA:   3'- gUGCUUGUa-------------CGGC-UACGGU----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 39464 0.67 0.647108
Target:  5'- aCACGAucaccCAUuucgCGAUGCCGcuGCGCCCGc -3'
miRNA:   3'- -GUGCUu----GUAcg--GCUACGGU--UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 5460 0.67 0.647108
Target:  5'- uCGCGcacGCGUGCCG-UGCCAAccauCGCCg- -3'
miRNA:   3'- -GUGCu--UGUACGGCuACGGUU----GCGGgc -5'
24807 5' -55 NC_005284.1 + 24391 0.67 0.642699
Target:  5'- gACGAucgACAUGCCGAccagcacacgcggGCCGAgcgcauCGCCCu -3'
miRNA:   3'- gUGCU---UGUACGGCUa------------CGGUU------GCGGGc -5'
24807 5' -55 NC_005284.1 + 16692 0.68 0.636084
Target:  5'- gGCGucgGCGUGCCGcUGacguCCGACGCgCCGu -3'
miRNA:   3'- gUGCu--UGUACGGCuAC----GGUUGCG-GGC- -5'
24807 5' -55 NC_005284.1 + 37024 0.68 0.625056
Target:  5'- cCGCGAcgucaGCA-GCa---GCCAGCGCCCGa -3'
miRNA:   3'- -GUGCU-----UGUaCGgcuaCGGUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 18430 0.68 0.625056
Target:  5'- -uCGAACAUcGUCGcgGCCGGCGCgaUCGa -3'
miRNA:   3'- guGCUUGUA-CGGCuaCGGUUGCG--GGC- -5'
24807 5' -55 NC_005284.1 + 10456 0.68 0.614034
Target:  5'- aCGCGGGCggcgcaaaGUGUCauGGUGCCGACGUuuGg -3'
miRNA:   3'- -GUGCUUG--------UACGG--CUACGGUUGCGggC- -5'
24807 5' -55 NC_005284.1 + 54338 0.68 0.603028
Target:  5'- aGCGGAUuUGUagaGAUgGCaCGACGCCCGa -3'
miRNA:   3'- gUGCUUGuACGg--CUA-CG-GUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 17667 0.68 0.603028
Target:  5'- uCACGGGCGUcuaccugcGCgCGAucgUGCgCGACGCCCu -3'
miRNA:   3'- -GUGCUUGUA--------CG-GCU---ACG-GUUGCGGGc -5'
24807 5' -55 NC_005284.1 + 30672 0.68 0.603028
Target:  5'- -uCGAGCAgccgGCCGGcggcuuucuUGCCGACGCgCu -3'
miRNA:   3'- guGCUUGUa---CGGCU---------ACGGUUGCGgGc -5'
24807 5' -55 NC_005284.1 + 38592 0.68 0.603028
Target:  5'- -cUGAGCAucUGCaCGAUGCCGcccaGCGCCa- -3'
miRNA:   3'- guGCUUGU--ACG-GCUACGGU----UGCGGgc -5'
24807 5' -55 NC_005284.1 + 35373 0.68 0.592048
Target:  5'- aACGAACGgcgcGCCGAUcacGCCugcacCGCCCu -3'
miRNA:   3'- gUGCUUGUa---CGGCUA---CGGuu---GCGGGc -5'
24807 5' -55 NC_005284.1 + 21857 0.68 0.592048
Target:  5'- gGCGAugGUGCCGccGCCuAUGCagaCGu -3'
miRNA:   3'- gUGCUugUACGGCuaCGGuUGCGg--GC- -5'
24807 5' -55 NC_005284.1 + 21804 0.68 0.581101
Target:  5'- gCACG-GCA-GCCGGUGgCGACggcguGCCCGg -3'
miRNA:   3'- -GUGCuUGUaCGGCUACgGUUG-----CGGGC- -5'
24807 5' -55 NC_005284.1 + 25356 0.68 0.581101
Target:  5'- gCAUGggUgguuUGCCGuUGCCGcCGCCCc -3'
miRNA:   3'- -GUGCuuGu---ACGGCuACGGUuGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.