miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24808 5' -58.2 NC_005284.1 + 15343 0.66 0.585676
Target:  5'- uCG-UGUCGCUCGGcGUgcagGCCGAuggcucgaUCGGCa -3'
miRNA:   3'- -GCgGCAGCGGGCC-CAa---CGGUU--------AGUCG- -5'
24808 5' -58.2 NC_005284.1 + 25578 0.66 0.575026
Target:  5'- cCGCCGUcCGCgCGgcGGUUGCCGA-CuGUu -3'
miRNA:   3'- -GCGGCA-GCGgGC--CCAACGGUUaGuCG- -5'
24808 5' -58.2 NC_005284.1 + 45033 0.67 0.532945
Target:  5'- gCGCCGUCGCCuCGacc-GCCcgcgcuUCGGCa -3'
miRNA:   3'- -GCGGCAGCGG-GCccaaCGGuu----AGUCG- -5'
24808 5' -58.2 NC_005284.1 + 46347 0.67 0.522589
Target:  5'- cCGCCGUCGC--GGGcucGCCGGaccaucUCGGCa -3'
miRNA:   3'- -GCGGCAGCGggCCCaa-CGGUU------AGUCG- -5'
24808 5' -58.2 NC_005284.1 + 20829 0.67 0.522589
Target:  5'- gCGUCGUCGCUUacGUUGaCCGAuaUCGGCg -3'
miRNA:   3'- -GCGGCAGCGGGccCAAC-GGUU--AGUCG- -5'
24808 5' -58.2 NC_005284.1 + 9223 0.67 0.512312
Target:  5'- aGCCGagUGCgCGGGcgacgcGCCAcgCGGCg -3'
miRNA:   3'- gCGGCa-GCGgGCCCaa----CGGUuaGUCG- -5'
24808 5' -58.2 NC_005284.1 + 47779 0.67 0.512312
Target:  5'- cCGCCaGUCaGCCCGGcGagcGCCAuGUCgAGCg -3'
miRNA:   3'- -GCGG-CAG-CGGGCC-Caa-CGGU-UAG-UCG- -5'
24808 5' -58.2 NC_005284.1 + 8956 0.67 0.512312
Target:  5'- aCG-CGUCGCaucuCGGGUUGUCuaucaacaGGUCGGCc -3'
miRNA:   3'- -GCgGCAGCGg---GCCCAACGG--------UUAGUCG- -5'
24808 5' -58.2 NC_005284.1 + 17856 0.67 0.509245
Target:  5'- uCGCCGUUGCcgacccaaagaaggCCGGcc-GCCGgAUCGGCg -3'
miRNA:   3'- -GCGGCAGCG--------------GGCCcaaCGGU-UAGUCG- -5'
24808 5' -58.2 NC_005284.1 + 6780 0.67 0.502119
Target:  5'- aGCCGUucaugCGgCCGGcGUUugaugcGUCGAUCGGCg -3'
miRNA:   3'- gCGGCA-----GCgGGCC-CAA------CGGUUAGUCG- -5'
24808 5' -58.2 NC_005284.1 + 39485 0.67 0.492017
Target:  5'- uGCCGcugCGCCCGcacaucgugcGGUccucGUCGGUCGGCu -3'
miRNA:   3'- gCGGCa--GCGGGC----------CCAa---CGGUUAGUCG- -5'
24808 5' -58.2 NC_005284.1 + 12354 0.67 0.492017
Target:  5'- uCGCgCGauUCGCCgCGGGUggGCUcGUUGGCg -3'
miRNA:   3'- -GCG-GC--AGCGG-GCCCAa-CGGuUAGUCG- -5'
24808 5' -58.2 NC_005284.1 + 25195 0.67 0.482008
Target:  5'- uGCCGguUCGCCCGaaaaGGUUGCgAcuAUgGGCc -3'
miRNA:   3'- gCGGC--AGCGGGC----CCAACGgU--UAgUCG- -5'
24808 5' -58.2 NC_005284.1 + 33366 0.67 0.482008
Target:  5'- cCGCCcguucGUCGgCCGGcGcUGCCGA-CGGCu -3'
miRNA:   3'- -GCGG-----CAGCgGGCC-CaACGGUUaGUCG- -5'
24808 5' -58.2 NC_005284.1 + 30150 0.68 0.4721
Target:  5'- cCGCCuUCGCCCGGccccugaGUCGAcUCGGCu -3'
miRNA:   3'- -GCGGcAGCGGGCCcaa----CGGUU-AGUCG- -5'
24808 5' -58.2 NC_005284.1 + 24374 0.68 0.443015
Target:  5'- uCGCCGUCGCgCaCGcGGacgaucgacaUGCCGAcCAGCa -3'
miRNA:   3'- -GCGGCAGCG-G-GC-CCa---------ACGGUUaGUCG- -5'
24808 5' -58.2 NC_005284.1 + 5236 0.69 0.405863
Target:  5'- aCGCCG-CGCCUGuGGaaucUGCCGGUCguugaaacgcaGGCg -3'
miRNA:   3'- -GCGGCaGCGGGC-CCa---ACGGUUAG-----------UCG- -5'
24808 5' -58.2 NC_005284.1 + 45883 0.69 0.396885
Target:  5'- gGCUGUCGCgUCGagcGGUUGCCGugGUCGcGCg -3'
miRNA:   3'- gCGGCAGCG-GGC---CCAACGGU--UAGU-CG- -5'
24808 5' -58.2 NC_005284.1 + 32797 0.69 0.379318
Target:  5'- gCGUCGgccUGCgCGGGUUGCgGggCGGCg -3'
miRNA:   3'- -GCGGCa--GCGgGCCCAACGgUuaGUCG- -5'
24808 5' -58.2 NC_005284.1 + 53563 0.69 0.370732
Target:  5'- uCGCCGUCGUCCGcacuGGggGCguG-CGGCu -3'
miRNA:   3'- -GCGGCAGCGGGC----CCaaCGguUaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.